CF835527

Overview
NameCF835527
Unique NameCF835527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = -1
Query:  325 TWFHITCNQDNR-VTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLG 774
            +W  +TC  D   V  L L    L G + P  LGKLE L+ L L  N + G +P ++ +L SL  + L +NN SG++P  ++  + L  L L+ N  TG+IP     +  L  + + +N L G +P         LN   N+     P  LG
Sbjct:   76 SWVGVTCTSDGTSVHALRLPGIGLLGPIPPNTLGKLESLRILSLRSNLLSGNLPPDIHSLPSLDYIYLQHNNFSGEVPSFVS--RQLNILDLSFNSFTGKIPATFQNLKQLTGLSLQNNKLSGPVPNLDTVSLRRLNLSNNHLNGSIPSALG 225          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = -1
Query:  313 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLGLASY 729
            L L ++ LSG++  +   L HL+ L L  N   G  P     L +LI LD+ +NN +G IP S+  L  L  L L +N  +G +P   +G+      +VS+N+L G+IP+S         +F  N  L G  L    S+
Sbjct:   96 LSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDF---NVSNNNLNGSIPSS--LSRFSAESFTGNVDLCGGPLKPCKSF 229          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  403 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVFLRLNDNRLTGQIPRELVGIS---SLKVVDVSSNDLCGTIP 729
            L L ++NL+G L  E+G+   LQ + L  N++ G+IP+ELG   SL  +DL  N ++G +PPS+  L   LV  +++ N L+G +P   +  S   +L+V+D+  N   G  P
Sbjct:  104 LQLPSANLTGSLPREIGEFSMLQSVFLNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDKLVSFKIHGNNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFP 216          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  403 LDLGNSNLSGRL---------VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 729
            L+L  +NL G +         +  L     ++ L+L  N++ G +P ++G ++ +  L+L NN +SG++P  L KL  L+FL L++N   GQIP +L   S +   +VS NDL G IP
Sbjct:  440 LNLSRNNLEGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLP--SQMVGFNVSYNDLSGIIP 555          

HSP 2 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  379 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHI 741
            R+  L L  ++ SGR+VP LG +  LQ+L+L  N   G IP  +  L SL  L+L +N   G  P     L+ L  L L+ N + G +      + +++ VD+S N   G +  S P E+I
Sbjct:  100 RLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVEFVDLSCNRFNGGL--SLPMENI 218          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = -1
Query:  403 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 765
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  496 DPTLVNPCTWFHITCNQDN-----RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLA-KLKSLVFLRLNDN 798
            DP +     W  +TC   N     R+  LDL +S L+G +VPE+  L  L+ L+   NN+ G +P  L  +KSL+ ++L  NN+SG +P +L  K+K+ + L +  N
Sbjct:  389 DPCVPQQLLWDGLTCEYTNMSTPPRIHSLDLSSSELTGIIVPEIQNLTELKKLDFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKVKNGLKLNIQGN 495          
BLAST of CF835527 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  397 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 783
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182          
The following BLAST results are available for this feature:
BLAST of CF835527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
Y5830_ARATH2.774e-1132.24Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y2267_ARATH2.774e-1133.09Probable inactive receptor kinase At2g26730 OS=Ara... [more]
TMKL1_ARATH2.774e-1136.28Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
Y5020_ARATH3.622e-1134.75Probable inactive receptor kinase At5g10020 OS=Ara... [more]
Y1765_ARATH4.731e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
Y1756_ARATH4.731e-1135.51Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH4.731e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01G13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835527 ID=CF835527; Name=CF835527; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTACCATTTGACACATTTAATACTTTTTATCCGTAACTCTCATA
GATGGAATAGAAAACACTTGGCTAGTATTGTATTACATCTAAAATTCTCA
TCTTGAAAGTTGAAACATTTTTATGAAGATCACAACGACGCTATTACAGA
TGCATTTAAGCAGTATAATACAATTTACATATATGATGGCTTCATTTCAC
CAATAACACTACGCTTTTTAGGTAAAGACGCTTTCGATCTTCGCGGACAC
ATCTATTCGAAACCTGAGTAGAGCTTGAAGCAACAATCAATCGTTTATGA
GCAGTTTGTGTCATAACTTGCAAGTCCCAGCAACTCTGGACCTTCTAATC
GAGGGTTATTCTCAAAGTTGTTGAGTGGGATGTGTTCAAATGGTCCGCTT
GTAGGAATTGTTCCACACAGATCATTGCTTGAAACATCCACAACTTTGAG
ACTTGAAATTCCAACAAGTTCCCTGGGAATTTGTCCAGTTAGCCGATTAT
CGTTAAGCCGCAAAAAAACAAGAGATTTCAATTTAGCCAAGGAAGGAGGG
ATTTTCCCCGAGATGTTGTTATTATACAAGTCCAAGCTGATGAGGCTCTT
CAAGTTACCGAGCTCGACAGGGATAGTTCCTTGGATGTTGTTTTTGTAAA
GTTCCAGGTATTGCAAATGCTCGAGCTTGCCCAGTTCAGGGACGAGACGG
CCGGATAGATTTGAATTACCCAAATCCAGTCGAGTAACGCGGTTGTCCTG
ATTACAGGTTATGTGAAACCAAGTGCAGGGATTGACGAGAGTTGGATC
back to top