CF835528

Overview
NameCF835528
Unique NameCF835528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835528_ssr22 microsatellite CF835528_ssr22:22..42. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835528_ssr93 microsatellite CF835528_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7970 contig Csv1_Contig7970:78..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835528 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  281 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 613
            L L ++ LSG++  +   L HL+ L L  N   G  P     L +LI LD+ +NN +G IP S+  L  L  L L +N  +G +P   +G+      +VS+N+L G+IP+S
Sbjct:   96 LSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDF---NVSNNNLNGSIPSS 203          
BLAST of CF835528 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  143 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 613
            S+  AL  L   +  P  + Q W     +PC   W  +TC+  +RVT++ L    LSG L    L KL  L  L+L  NN+ G +P +     +L  L+L NN  +G    SL+++  L +L L  N+  GQI  +   + SL  +D S N    ++P +
Sbjct:   30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185          
BLAST of CF835528 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 2
Query:  245 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 607
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
BLAST of CF835528 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  227 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 613
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182          
The following BLAST results are available for this feature:
BLAST of CF835528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
Y2267_ARATH2.381e-1136.04Probable inactive receptor kinase At2g26730 OS=Ara... [more]
SRF6_ARATH2.381e-1131.88Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
Y1765_ARATH3.109e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH3.109e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835528 ID=CF835528; Name=CF835528; organism=Citrus sinensis; type=EST; length=633bp
GAGAGAGCCTTAGAGAGCCATGGCGGCGGCGGCGGCGGCGGCGGAAGCGG
CAGTGCAGTGGTTGAGTGTGTGTATAACGTTCAGCATAAGCCTAATAATA
ATAATAGGGAGCAGCAGCTTGGTGGCGGTGGCGAGTGGAAACTCGGAAGG
GGACGCGCTGTACGCGCTCAGGAGAAGCTTATCAGATCCCGATAACGTGC
TTCAGAGCTGGGATCCAACTCTCGTCAATCCCTGCACTTGGTTTCACATA
ACCTGTAATCAGGACAACCGCGTTACTCGACTGGATTTGGGTAATTCAAA
TCTATCCGGCCGTCTCGTCCCTGAACTGGGCAAGCTCGAGCATTTGCAAT
ACCTGGAACTTTACAAAAACAACATCCAAGGAACTATCCCTGTCGAGCTC
GGTAACTTGAAGAGCCTCATCAGCTTGGACTTGTATAATAACAACATCTC
GGGGAAAATCCCTCCTTCCTTGGCTAAATTGAAATCTCTTGTTTTTTTGC
GGCTTAACGATAATCGGCTAACTGGACAAATTCCCAGGGAACTTGTTGGA
ATTTCAAGTCTCAAAGTTGTGGATGTTTCAAGCAATGATCTGTGTGGAAC
AATTCCTACAAGCGGACCATTTGAACACATCCC
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