CF835529

Overview
NameCF835529
Unique NameCF835529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835529 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  346 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEG 714
            LSG +   L  L +LQ+L +   N+ G IP  L  ++SL S+DL +N+++G IP S + L +L  L L  N+LTG IP  LV     + + +S N L G IP     + I   +  +N RL G
Sbjct:  108 LSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQ-GQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHN-RLTG 228          
BLAST of CF835529 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  409 LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 702
            L  +L  L  L+ L L  N I   +P  +GN  SL +LDL  N+ISGKIP +++ L +L  L+L++N     +P ELV   SL  +D+SSN L  ++P
Sbjct:  105 LPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLP 202          
BLAST of CF835529 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  409 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 690
            L     ++ L+L  N++ G +P ++G ++ +  L+L NN +SG++P  L KL  L+FL L++N   GQIP +L   S +   +VS NDL G IP
Sbjct:  464 LNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLP--SQMVGFNVSYNDLSGIIP 555          
BLAST of CF835529 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = -3
Query:  361 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 714
            L+G L P+   L  L+YL L  N   G IP  L  L ++I ++L  NN  G+IP ++     L  L L DN+LTG IP   +    L+  +VSSN L G+IP   P   +P   F  N
Sbjct:   99 LNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKI---KLQQFNVSSNQLNGSIP--DPLSGMPKTAFLGN 211          
The following BLAST results are available for this feature:
BLAST of CF835529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PGIP1_ORYSJ4.543e-1137.40Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
Y5815_ARATH5.933e-1140.82Probably inactive leucine-rich repeat receptor-lik... [more]
Y5020_ARATH5.933e-1138.30Probable inactive receptor kinase At5g10020 OS=Ara... [more]
Y5659_ARATH7.749e-1138.14Probable inactive receptor kinase At5g16590 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835529 ID=CF835529; Name=CF835529; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTACCATTTGACACATTTAATACTTTTTATCCGTAACT
CTCATAGATGGAATAGAAAACACTTGGCTAGCCTTGTATTACATCTAAAA
TTCTCATCTTGAAAGTTGAAACATTTTTATGAAGATCACAACGACGCTAT
TACAGATGCATTTAAGCAGTATAATACAATTTACATATATGATGGCTTCA
TTTCACCAATAACACTACGCTTTTTAGGTAAAGACGCTTTCGATCTTCGC
GGACACATCTATTCGAAACCTGAGTAGAGCTTGAAGCAACAATCAATCGT
TTATGAGCAGTTTGTGTCATAACTTGCAAGTCCCAGCAACTCTGGACCTT
CTAATCGAGGGTTATTCTCAAAGTTGTTGAGTGGGATGTGTTCAAATGGT
CCGCTTGTAGGAATTGTTCCACACAGATCATTGCTTGAAACATCCACAAC
TTTGAGACTTGAAATTCCAACAAGTTCCCTGGGAATTTGTCCAGTTAGCC
GATTATCGTTAAGCCGCAAAAAAACAAGAGATTTCAATTTAGCCAAGGAA
GGAGGGATTTTCCCCGAGATGTTGTTATTATACAAGTCCAAGCTGATGAG
GCTCTTCAAGTTACCGAGCTCGACAGGGATAGTTCCTTGGATGTTGTTTT
TGTAAAGTTCCAGGTATTGCAAATGCTCGAGCTTGCCCAGTTCAGGGACG
AGACGGCCGGATAGATTTGAATTACCCCAAATCCAGTCGAGTAACGCGGT
TGTCCTGATTACAGGTTATGTGAAACCAAGTG
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