CF835535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = -1 Query: 269 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 514 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18 Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = -1 Query: 275 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 514 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.483e-18 Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = -1 Query: 269 NKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 511 NK++CP +N+D LWS+V +DV+A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.108e-17 Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = -1 Query: 269 NKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 511 NK++CP +N+D LWS+V +D++A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 2.468e-17 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = -1 Query: 269 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 514 RN+ CP VN+DK W++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.468e-17 Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = -1 Query: 269 NKFHCPIVNIDKLWSMVPQDV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 511 NK++CP +N+D LWS+V +DV K + + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 66 NKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 3.564e-16 Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = -1 Query: 269 RNKFHCPIVNIDKLWSMVPQDVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 514 +N+ CP +N+DKLW++V + + AK + P+ID GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 KNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.079e-16 Identity = 48/82 (58.54%), Postives = 51/82 (62.20%), Query Frame = -1 Query: 272 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 517 LRNKF+C IVN+DKLWSMV LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT Sbjct: 45 LRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.037e-15 Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = -1 Query: 269 FHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 505 F P++N+DKLW+++P+D + + ASK+ P+ID GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A Sbjct: 68 FWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
BLAST of CF835535 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15 Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = -1 Query: 269 LRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 517 LRN PI+NI+KLW++VP + + K A+ + P+ID+ GY K+LGKG LP+ P+VV+A+ VS AE+KIKEAGG + L A Sbjct: 64 LRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149 The following BLAST results are available for this feature:
BLAST of CF835535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835535 ID=CF835535; Name=CF835535; organism=Citrus sinensis; type=EST; length=517bpback to top |