CF835538

Overview
NameCF835538
Unique NameCF835538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF835538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_DROOR2.707e-3697.44Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3[more]
H4_DROME2.707e-3697.44Histone H4 OS=Drosophila melanogaster GN=His4 PE=1... [more]
H4_DROMA2.707e-3697.44Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S... [more]
H4_DROHY2.707e-3697.44Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2[more]
H4_DROER2.707e-3697.44Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2[more]
H4_CHITH2.707e-3697.44Histone H4 OS=Chironomus thummi thummi GN=His4 PE=... [more]
H4_CHICK2.707e-3697.44Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2[more]
H4_CHAVR2.707e-3697.44Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3[more]
H4_CAIMO2.707e-3697.44Histone H4 OS=Cairina moschata PE=3 SV=2[more]
H4_BOVIN2.707e-3697.44Histone H4 OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835538 ID=CF835538; Name=CF835538; organism=Citrus sinensis; type=EST; length=622bp
ACGGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGG
AAAGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCA
AGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGAT
AACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGG
TGGAGTCAAGCGCATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCC
TGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAG
CACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAA
GAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTT
CTGGAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGAT
GGGGCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAG
TTAAATCTTATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAG
GATTGTTCCGTGGTTCTGGATTTTATTTATTAAACTATTTGATGTGCTGT
TTGGATAAAAAAAAAAAAAAAA
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