CF835538

Overview
NameCF835538
Unique NameCF835538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:136..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.344e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLY 99
[Close]
BLAST of CF835538 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  139 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 372
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF835538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI1.344e-3596.15Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC1.344e-3596.15Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR1.344e-3596.15Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI1.344e-3596.15Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI1.344e-3596.15Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU1.344e-3596.15Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL1.344e-3596.15Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA2.292e-3596.15Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK2.292e-3596.15Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST2.993e-3594.87Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835538 ID=CF835538; Name=CF835538; organism=Citrus sinensis; type=EST; length=622bp
ACGGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGG
AAAGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCA
AGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGAT
AACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGG
TGGAGTCAAGCGCATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCC
TGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAG
CACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAA
GAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTT
CTGGAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGAT
GGGGCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAG
TTAAATCTTATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAG
GATTGTTCCGTGGTTCTGGATTTTATTTATTAAACTATTTGATGTGCTGT
TTGGATAAAAAAAAAAAAAAAA
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