CF835549

Overview
NameCF835549
Unique NameCF835549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVWNL NC+L+    GHTGYVNTV VSPDGSLCASGGKDG  +LWDL EGK LY+L    VI+A+ FSPNRYWLCAA   SIKIWDLE K  +E+LK ++                   +  C SL WS DG TLF+GYTD +IRV+ +
Sbjct:  181 KVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGNDVINAMSFSPNRYWLCAAVGSSIKIWDLEDKKEIEELKPEI----------ASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQV 319          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.311e-41
Identity = 81/149 (54.36%), Postives = 96/149 (64.43%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVWNL+NCKL+    GH GY+NTV VSPDGSLC SGGKD   LLWDL +GK LY+L+   +I+ALCFSPNRYWLC A   SIKIWDL  K  VE+L+ ++                      C SL WS DG TLF+GY+D  IRVW +
Sbjct:  176 KVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQP-----------QCLSLAWSTDGQTLFAGYSDNTIRVWQV 313          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 6.903e-39
Identity = 80/149 (53.69%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVW+L    LR +  GHTGYV+ V +SPDGSLCASGG+DG ++LWDL E   LYSL+A A I+AL FSPNRYWLCAAT  SI+I+DLE++  V++L VD                       C SL WS DG TLFSG+TD +IRVW +
Sbjct:  175 KVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPE-----------CISLTWSPDGQTLFSGWTDNLIRVWQV 312          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.633e-38
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WS DGSTL+SGYTD VIRVWG+
Sbjct:  179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.633e-38
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WS DGSTL+SGYTD VIRVWG+
Sbjct:  179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WS DG+TL+SG+ D +IRVW I
Sbjct:  177 KVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WS DG+TL+SG+ D +IRVW I
Sbjct:  177 KVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.330e-36
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WS DG+TL+SG+ D +IRVW I
Sbjct:  177 KVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34
Identity = 70/147 (47.62%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  239 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 679
            K+W++ + K   TL  HTGYVNTV +SPDGSLCASGGKD    LW+L+ GK LY L+A   I+AL FSPN+YWL AAT+  I IWDL +K ++ ++  ++                      C SL WS DGS L++GY DG+IRV+
Sbjct:  181 KIWDIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIWDLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPA---CLSLAWSADGSVLYAGYNDGLIRVY 324          
BLAST of CF835549 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  233 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 679
            K WNL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      +  SL WS DG TLF+GYTD VIRVW +
Sbjct:  179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HAVSLAWSADGQTLFAGYTDNVIRVWQV 315          
The following BLAST results are available for this feature:
BLAST of CF835549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GBLP_CAEEL3.537e-4357.05Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_DROME3.311e-4154.36Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SCHPO6.903e-3953.69Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBR7.633e-3851.68Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB7.633e-3851.68Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN4.188e-3647.65Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH4.188e-3647.65Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA9.330e-3647.65Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DICDI5.120e-3447.62Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_YEAST1.542e-3043.62Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835549 ID=CF835549; Name=CF835549; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTTTTTTTTTTTATGTAACACATCTAAAATAATAAGCCACCCTTT
AAGGCCNGAGGGCTCAAAGCCATATAAGATCCAACCCAAGAGAACAAAAT
ATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAAA
CTGCCTACCAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGTT
TGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGAT
CACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAGT
TCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTG
GTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCTC
GACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTCG
CCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGACA
GCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACAA
CAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGCG
ACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTA
AGCTTGCAGTTGCTCAAATTCCACACTTTG
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