CF835550

Overview
NameCF835550
Unique NameCF835550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:108..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: SMU1_DANRE (WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 53/178 (29.78%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  127 VARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKD--------VLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 633
            +AR    G    V+    S DGQ+ ++GS DG + +W+   GK  +      +D        VL ++FS D   + + ++D  IK+W    G+C    +   AH++ V+C+ FS ++ Q  I+SAS+D+T+++  L + K      GH+ +VN   ++PDG    S   DG + +W++
Sbjct:  205 LARHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQCLRRYER--AHSKGVTCLSFSKDSTQ--ILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATLTPDGHHAISASSDGTVKVWNM 378          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 61/189 (32.28%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   64 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            T   D+S  +W L  +E+          GHS  V D+    DG  A +G  D   R+WDL  G+      GH K++  + FS +   I + S D T K+W+     C YTI    AH   V+ V+F P      +++ ++D T K+W         TLAGH G V  + +S DG L A+   D    LW
Sbjct:  339 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 61/189 (32.28%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   64 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            T   D+S  +W L  +E+          GHS  V D+    DG  A +G  D   R+WDL  G+      GH K++  + FS +   I + S D T K+W+     C YTI    AH   V+ V+F P      +++ ++D T K+W         TLAGH G V  + +S DG L A+   D    LW
Sbjct:  340 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 61/189 (32.28%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   64 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            T   D+S  +W L  +E+          GHS  V D+    DG  A +G  D   R+WDL  G+      GH K++  + FS +   I + S D T K+W+     C YTI    AH   V+ V+F P      +++ ++D T K+W         TLAGH G V  + +S DG L A+   D    LW
Sbjct:  339 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: NLE1_ARATH (Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 77/243 (31.69%), Postives = 110/243 (45.27%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-----GQF------------------------------ALSGSWDGELRLWDLAEGKSAR-RFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            HT  VT +    D   +I T S+D +I +W     E T G   R L GH H++  + LS++     G F                               +SGS D  + LW+ +  K  + R  GH + V  V FS D + I SAS D++++LWN +     T+  G  H   V  V +S ++    ++S S D T+K+W +   KL+  L GH   V  V  SPDG    SGGKD V+ LW
Sbjct:  240 HTLAVTCVKWGGDG--IIYTGSQDCTIKMW-----ETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDHTGRQYPPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRG--HVGPVYQVSWSADSR--LLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471          

HSP 2 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQP---TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            + GH+  V  V  S DG+   SGS D  +RLWDL          GH   VL+VA+S D + +VS S+   I  WN   GE + +   G  H +W++ + + P  L       V++S D   ++W+++  K    L+GHT  V  V    DG +  +G +D  I +W+  +GK +  L
Sbjct:  105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTG--HKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWGGDG-IIYTGSQDCTIKMWETTQGKLIREL 278          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 65/210 (30.95%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   10 THLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARR-FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            T L    A  I     +V  + D  I V++    +K      +    HS +++ V +     + LS S D  ++LWD   G +  + F GH+  V+ V F+  D     SAS DRTIK+WN LG  +  +T+   DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:   56 TELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKV-----KVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = 1
Query:   10 THLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARR-FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            T L    A  +     +V  + D  I V++    +K      +    HS +++ V +     + LS S D  ++LWD  +G +  + F GH+  V+ V F+  D     SAS DRTIK+WN LG  +  +T+   DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:   56 TELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKV-----KVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 57/222 (25.68%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   19 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRR------LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            V  +   I  ++ ++TASR + +    L  +EK      R+      L  H   + +V  +  G   ++GS+D   ++WD A G+      GH   V ++ F+     +I + S D+T KLW+   G+C +T +    HT  + C+ F+P +    I + S D T K+W++ + +   TL+GH   + +++ +  G    +G  D  + +W++  G+R+++L
Sbjct:   41 VDLVVGEIQKAEPLITASRTQQVKQLILRLQEKIGQQDSRQFYLFKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFR---GHTAEIVCLVFNPQS--TLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTL 257          

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 64/221 (28.96%), Postives = 101/221 (45.70%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            RAH   +T +A     S  I T S D++  VW     E+ +      L GH + V  +  ++  G    +GS+D   +LW    GK    F GHT +++ + F+  +  I + S D T KLW+     +     G A       +  S NT    +++ S+D TV VW + + +   TL GH G +++   + D SL A+   D    LWD   GK + +L
Sbjct:   89 RAHILPLTNVAFNKSGSSFI-TGSYDRTCKVWDTASGEELH-----TLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLVFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHA----AEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATL 299          

HSP 3 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 61/222 (27.48%), Postives = 109/222 (49.10%), Query Frame = 1
Query:    1 RAHT-HLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            R HT  +V  +  P   S +I T S D +  +W +   E+        L+GH+  +  +  ++ G   ++GS+D  + +W++  G+     +GH  ++ S  F+ D   I +AS D++ KLW++L G+C  T+     H + V  V F  ++    + +AS D T +V++ S+ K  A L GH G ++ +  +  G+   +   D    LWD   G+ L  L
Sbjct:  174 RGHTAEIVCLVFNP--QSTLIATGSMDTTAKLWDIQSGEEAL-----TLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATL---TGHDDEVLDVTF--DSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKTSRLWDPHTGECLQVL 383          

HSP 4 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 63/230 (27.39%), Postives = 104/230 (45.22%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCF 693
            H ++V AI       D I T S DK+  +W   +  K Y   R    GH+  +  +V +       +GS D   +LWD+  G+ A    GH  +++S++F+    ++++ S D T+ +W      +     G  H   +S  +F+ +     I +AS D++ K+W+  N K  ATL GH   V  V     G L A+   DG   ++  +  K L  L+     I  +CF
Sbjct:  133 HRNVVYAIQFNNPYGDKIATGSFDKTCKLWS-AETGKCYHTFR----GHTAEIVCLVFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIG--HRGEISSAQFNWDC--SLIATASMDKSCKLWDSLNGKCVATLTGHDDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICF 353          

HSP 5 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 48/192 (25.00%), Postives = 86/192 (44.79%), Query Frame = 1
Query:   52 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            D ++T S D ++ VW +    + +      L GH   +     + D     + S D   +LWD   GK      GH  +VL V F    + + +AS D T ++++     +  + + + H   +S + F  N     IV+AS D+T ++W+    +    L GHT  + + A + +G+   +G KD    +W
Sbjct:  232 DRLITGSFDHTVSVWEIPSGRRIH-----TLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHDDEVLDVTFDSTGQLVATASADGTARVYSA--SSRKCLAKLEGHEGEISKICF--NAQGNRIVTASSDKTSRLWDPHTGECLQVLKGHTDEIFSCAFNYEGNTIITGSKDNTCRIW 414          

HSP 6 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 45/156 (28.85%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  226 LRLWDLAEGKSARRFV------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA 672
            LRL +    + +R+F        H   + +VAF+      ++ S DRT K+W+T  GE  +T++    H   V  ++F+ N     I + S+D+T K+W+    K   T  GHT  +  +  +P  +L A+G  D    LWD+  G+   +L   A
Sbjct:   68 LRLQEKIGQQDSRQFYLFKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLE---GHRNVVYAIQFN-NPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLVFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHA 219          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_ENCCU (Guanine nucleotide-binding protein subunit beta-like protein OS=Encephalitozoon cuniculi GN=ECU08_1110 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 68/233 (29.18%), Postives = 111/233 (47.64%), Query Frame = 1
Query:   40 IDNSDMIVTASRDKSIIVWHL-TKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG--------------------HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            +   +++ ++SRDK +  W L +K +  +G + +    GHS  +  + +S DG   ++   DG  R+WD  E K +    GH +DVL V+ + ++ +IV+ S DRT+ L+NT G+   K        H  W++CV F P T +  + S S D TVK+W+L   +   T  G                     +  V  +A S DGS+   G K G + L  +   + + S DA
Sbjct:   27 VSGREILYSSSRDKKVFSWDLHSKIDSEFGKILKLYDGGHSKRINGLDVSKDGNMMVTVGSDGIGRIWD-TESKKSILLEGHGRDVLCVSINSNDTKIVTGSVDRTMNLYNTKGDLVLKMGRDMEMMHRGWINCVTFHP-TEESILASGSADGTVKIWDLDTQEHLQTYLGGAYVDYEKAKEKKTSPVDYDESKSVTAMAFSKDGSILTYGEKSGKMYLVKVDSKECIQSFDA 257          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 50/177 (28.25%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  136 RRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            R L  H   + +V  +  G   ++GS+D   ++WD A G+      GH   V ++AF+     ++ + S D+T KLW+   G+C YT +    HT  + C+ F+P +    + + S D T K+W++ + +  +TLAGH   + ++  +  G    +G  D   +LWD+  G++++ L
Sbjct:   86 RALQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFR---GHTAEIVCLAFNPQS--TLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVL 257          

HSP 2 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/221 (25.79%), Postives = 102/221 (46.15%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            +AH   +T +A     S   +T S D++  +W     E+ +      L GH + V  +  ++  G    +GS+D   +LW    GK    F GHT +++ +AF+  +  + + S D T KLW+     + +   G     +   +    NT    +V+ S+D T  +W++ + +    L+GH G ++ V  + D SL A+   D    +WD   G+ L +L
Sbjct:   89 QAHILPLTNVAFNKSGS-CFITGSYDRTCKIWDTASGEELH-----TLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAG----HFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATL 299          

HSP 3 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 58/222 (26.13%), Postives = 98/222 (44.14%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 663
            R HT  +  +A     S ++ T S D +  +W +   E+        L GH   +  +  ++ G   ++GS+D    LWD+  G+      GH  ++  V F+ D   I +AS D++ K+W+   G+C  T+     H + V  V F  N     I +AS D T +V++    +    L GH G ++ V  +  GS   +   D    +W +  G  L  L+
Sbjct:  174 RGHTAEIVCLAFN-PQSTLVATGSMDTTAKLWDVESGEEV-----STLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLL---GHNDEVLDVCF--NYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLE 384          

HSP 4 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 50/192 (26.04%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   52 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            D +VT S D + I+W +    K +      L+GH   +  V  + D     + S D   ++WD   G+     +GH  +VL V F+   + I +AS D T ++++T  +    + + + H   +S V F  N     +++AS D+T +VW +        L GH+  + + A + +G    +G KD    +W
Sbjct:  232 DRLVTGSFDHTAILWDVPSGRKVHV-----LSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFST--DTFQCLCQLEGHKGEISKVCF--NAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFNYEGDTIITGSKDNTCRIW 414          

HSP 5 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  262 RRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCF 693
            R    H   + +VAF+      ++ S DRT K+W+T  GE  +T++    H   V  + F+ N     + + S+D+T K+W+    K   T  GHT  +  +A +P  +L A+G  D    LWD+  G+ + +L AG  A I +LCF
Sbjct:   86 RALQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLE---GHRNVVYAIAFN-NPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTL-AGHFAEIISLCF 227          
The following BLAST results are available for this feature:
BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
SMU1_DANRE2.411e-1829.78WD40 repeat-containing protein SMU1 OS=Danio rerio... [more]
PRP4_PONAB2.411e-1832.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pong... [more]
PRP4_HUMAN2.411e-1832.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo... [more]
PRP4_BOVIN2.411e-1832.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos ... [more]
NLE1_ARATH2.411e-1831.69Notchless protein homolog OS=Arabidopsis thaliana ... [more]
COB23_ARATH2.411e-1830.95Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ARATH2.411e-1830.48Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
WDR69_XENLA3.149e-1825.68WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
GBLP_ENCCU3.149e-1829.18Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_DANRE4.112e-1828.25WD repeat-containing protein 69 OS=Danio rerio GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bp
CGCGCCCACACCCACTTGGTGACGGCGATCGCCACCCCAATCGACAACTC
TGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACC
TCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGC
CACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGC
TCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGG
GAAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTC
GCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTAC
GATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGG
GAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACG
CTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTG
GAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGAT
ACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGA
GGGAAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACT
CTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA
back to top