CF835550

Overview
NameCF835550
Unique NameCF835550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:108..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: WDR48_DROYA (WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV-----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 639
            N+  + +A RD  I VW+   +     +  + +  H+ +V D+VL  +G+  +S S D  +++W+  +G        H   V ++A++ D  Q+ SA  D+ I LW+       T       T  +     S    + N     IVS S +  +++W+   C     L GHT  V  + VSPDG+   SG  DG I +W+L +
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKYI--QSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQ 239          

HSP 2 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 58/177 (32.77%), Postives = 84/177 (47.46%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWH------LTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 513
            R H   V A+A   D  + + +A  DK+I +W       LT    T  V    LTG    +  + ++  G   +SGS +  LR+WD      + +  GHT++V  +  S D  Q+VS S D TIK+WN LG+ +  +Q    H E V  +  S N     IVS S DR + V  + N
Sbjct:  112 RTHRDYVQALAYAKDR-EQVASAGLDKAIFLWDVNTLTALTASNNT--VTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWN-LGQ-QRCVQTIHVHKEGVWSLLMSENF--QYIVSGSRDRNIIVTEMRN 281          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: WDR48_DROER (WD repeat-containing protein 48 homolog OS=Drosophila erecta GN=GG22678 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV-----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 639
            N+  + +A RD  I VW+   +     +  + +  H+ +V D+VL  +G+  +S S D  +++W+  +G        H   V ++A++ D  Q+ SA  D+ I LW+       T       T  +     S    + N     IVS S +  +++W+   C     L GHT  V  + VSPDG+   SG  DG I +W+L +
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKYI--QSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQ 239          

HSP 2 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 57/177 (32.20%), Postives = 84/177 (47.46%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWH------LTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 513
            R H   V A+A   D  + + +A  DK+I +W       LT    T  V    LTG    +  + ++  G   +SGS +  LR+WD      + +  GHT++V  +  S D  Q+VS S D TIK+WN LG+ +  +Q    H E V  +  S N     I+S S DR + V  + N
Sbjct:  112 RTHRDYVQALAYAKDR-EQVASAGLDKAIFLWDVNTLTALTASNNT--VTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRSMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWN-LGQ-QRCVQTIHVHKEGVWSLLMSENF--QYIISGSRDRNIIVTEMRN 281          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 60/196 (30.61%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 633
            +S  +++ S D SI  W L     T         GH++ V DV +S    +  SGS D   RLW        R + GH  DV  V F  ++  + + S D+T++LW+   +   +++    H   V  + FSPN     + SA  D+ +K+W+L++  L   L GHT  + ++A SPD  L AS   D  + +WD+
Sbjct:  353 DSSGLLSCSEDMSIRYWDLGSFTNTV-----LYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNSVRLFTGHRGPVLSLSFSPN--GKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539          

HSP 2 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  109 EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 642
            EE   G   + L GH   V      +D    LS S D  +R WDL    +   + GH   V  V  S  +    S S DRT +LW+   +  Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V +++ SP+G   AS G+D  + LWDLA G
Sbjct:  327 EEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASG 500          

HSP 3 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 49/162 (30.25%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   64 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG 549
            + S D++  +W     ++TY +  R   GH   V  V    +  +  +GS D  +RLW   +G S R F GH   VLS++FS + + + SA  D+ +KLW+      +  +E   HT+ ++ + FSP++    I SAS D +V+VW++ +        G +G
Sbjct:  401 SGSHDRTARLWSF---DRTYPL--RIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLF--KELRGHTDSITSLAFSPDS--GLIASASMDNSVRVWDIRSTCCNTPADGSSG 553          

HSP 4 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA 408
            NS+ + T S DK++ +W   +     G + R  TGH   V  +  S +G++  S   D  L+LWDLA G   +   GHT  + S+AFS D+  I SAS D ++++W+    C  T  +G +
Sbjct:  437 NSNYLATGSTDKTVRLWSAQQ-----GNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSS 552          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PLRG1_RAT (Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 68/228 (29.82%), Postives = 103/228 (45.18%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHAL 687
            H   V  IA    N    VT S D++I +W L       G  +  LTGH   V+ V++S+   +  S   D +++ WDL   K  R + GH   V  +        +V+ SRD T ++W+     K ++     HT  V+ VR      +P I++ S D T+++W+L   K R TL  H   V  V + P     ASG  D  I  W   +G  + +L    A+I+ L
Sbjct:  203 HLGWVRCIAVEPGNQ-WFVTGSADRTIKIWDLAS-----GKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDV--RTKASVHTLSGHTNAVATVRC--QAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDN-IKQWKFPDGGFIQNLSGHNAIINTL 419          

HSP 2 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  136 RRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            R ++GH  +V+ + +    Q+ ++GS D  +++WDLA GK      GH   V  V  S  +  + S   D+ +K W+   E    I+    H   V  +   P      +V+ S D T ++W++       TL+GHT  V TV          +G  D  I LWDL  GK   +L
Sbjct:  198 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDL--EYNKVIRHYHGHLSAVYGLDLHPTI--DVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTL 368          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 80/250 (32.00%), Postives = 108/250 (43.20%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-----GQFA-------------------------------------LSGSWDGELRLWDLAEGKSA-RRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            HT  VT +    D   ++ +AS+D++I VW         GV  R L GH H+V  + LS+D     G F                                      +SGS D  L LW  AE K    R  GH   +  V FS D+R + SAS D++IKLW+  G     +     H   V  + +S ++    +VS S D T+KVW++   KL   L GH   V  V  SPDG   ASGGKD  + +W
Sbjct:  245 HTQSVTCLRWGGDG--LLYSASQDRTIKVWRAHD-----GVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLRGHVAAVYQIAWSADSR--LLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG---DAHTEWVSCVRFSPNTLQPT---IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 642
            L GHS  V  V  S  G++  SGS D  +R WDL+         GH   VLS+++S D +++ S  ++  I LW+        +Q G     H++W++ + + P  + P    + S+S D +V+VW+ +  +    L GHT  V  +    DG L  S  +D  I +W   +G
Sbjct:  110 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDP----STGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDG 277          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: FBW1B_HUMAN (F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 663
            + + I++  RD SI +W  T  E       + LTGH+  V  + L  D +  ++GS D  +R+WD+  G+     + H + VL + FS  N  +V+ S+DR+I +W+       T++     H   V+ V F        IVSAS DRT+KVW+ S C+   TL GH   +    +     L  SG  D  I LWD+  G  L  L+
Sbjct:  249 DDEKIISGLRDNSIKIWDKTSLE-----CLKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKY----IVSASGDRTIKVWSTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 440          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 58/198 (29.29%), Postives = 101/198 (51.01%), Query Frame = 1
Query:   40 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARR-FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            I     IVT S D  I V++    EK      +    H+ +++ +++     + LS S D  ++LWD  +G S  + F GH+  V+S+A++  D  Q  +AS D+T+K+W+      +   EG  H + ++ V +     +P ++S + D+ VK+W+  +     TL GH+  V+ V   P+  L  SG +DG + LW
Sbjct:   67 IAKKQWIVTGSDDTYIRVYNYNTMEKI-----KSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEG--HEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQSKTCVQTLEGHSNNVSVVCYHPELPLILSGSEDGTVKLW 257          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 54/199 (27.14%), Postives = 94/199 (47.24%), Query Frame = 1
Query:   58 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 639
            + TA RD  I +W + + ++   +A   +  H+ +V D++L  +G+  +S S D  +++W+  +G        H   V ++A++ D   + SA  DR I LW+      L     T+          S    + N     I+S S ++ ++VW+   C     L GHT  V ++ ++ DG+ C SG  DG I LW L +
Sbjct:   45 LFTAGRDSIIRIWSVNQHKQDPYIAS--MEHHTDWVNDIILCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: TBL3_MOUSE (Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 69/236 (29.24%), Postives = 112/236 (47.46%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS-DGQFALSGSWDGELRLWDLAEGKSARRFVG---------------HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            HT +V A+        +  + ++D+SI +W + K  +   VA+   +GH+H V  +  S     F ++GS D  ++LW L E   A+                   H KD+ S+A S +++ + + S+DRT KLW  L +C+  +     H   +  V+FSP      + +AS D T+K+W L +     T  GH   V  VA    GS   S G DG++ LW +   + + +LDA
Sbjct:  375 HTDIVLALDV-FRKGWLFASCAKDQSIRIWKMNKAGQVACVAQG--SGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLW-ALPQCQL-LGVFTGHRRGLWNVQFSPT--DQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDA 603          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 80/250 (32.00%), Postives = 108/250 (43.20%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-----GQFA-------------------------------------LSGSWDGELRLWDLAEGKSA-RRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            HT  VT +    D   ++ +AS+D++I VW         GV  R L GH H+V  + LS+D     G F                                      +SGS D  L LW  AE K    R  GH   +  V FS D+R + SAS D++IKLW+  G     +     H   V  + +S ++    +VS S D T+KVW++   KL   L GH   V  V  SPDG   ASGGKD  + +W
Sbjct:  245 HTQSVTCLRWGGDG--LLYSASQDRTIKVWRAHD-----GVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLMRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD--GRTGKYLASLRGHVAAVYQIAWSADSR--LLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 59/195 (30.26%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN---------TLG------------------ECKYTIQEG-------------------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 588
            L GHS  V  V  S  G++  SGS D  +R WDL+         GH   VLS+++S D +++ S  ++  I LW+         TL                   EC+Y                          HT+ V+C+R+  + L   + SAS DRT+KVW   +  L  TL GH  +VNT+A+S D +L
Sbjct:  110 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGL---LYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYAL 301          
The following BLAST results are available for this feature:
BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
WDR48_DROYA4.112e-1827.59WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROER4.112e-1827.59WD repeat-containing protein 48 homolog OS=Drosoph... [more]
TAF5L_MOUSE4.112e-1830.61TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
PLRG1_RAT4.112e-1829.82Pleiotropic regulator 1 OS=Rattus norvegicus GN=Pl... [more]
NLE1_MOUSE4.112e-1832.00Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
FBW1B_HUMAN4.112e-1832.37F-box/WD repeat-containing protein 11 OS=Homo sapi... [more]
COPB2_DICDI4.112e-1829.29Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
WDR48_DANRE5.371e-1827.14WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
TBL3_MOUSE5.371e-1829.24Transducin beta-like protein 3 OS=Mus musculus GN=... [more]
NLE1_PONAB5.371e-1832.00Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bp
CGCGCCCACACCCACTTGGTGACGGCGATCGCCACCCCAATCGACAACTC
TGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACC
TCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGC
CACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGC
TCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGG
GAAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTC
GCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTAC
GATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGG
GAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACG
CTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTG
GAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGAT
ACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGA
GGGAAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACT
CTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA
back to top