CF835550

Overview
NameCF835550
Unique NameCF835550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:108..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_NEUCR (Guanine nucleotide-binding protein subunit beta-like protein OS=Neurospora crassa GN=cpc-2 PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.285e-87
Identity = 149/229 (65.07%), Postives = 180/229 (78.60%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H   VT++AT ++N +M+++ SRDKS+I+W+LT++E +YG  +RRL GHSH V D V+SSDG +ALS SWD  LRLW+L+ G + RRFVGHT DVLSV+FS DNRQIVS SRDRTIKLWNTLG+CK+TI E   HTEWVSCVRFSPN   P IVS+ WD+ VKVW LS+CKL+    GHTGY+N V +SPDGSLCASGGKDG  +LWDL E K LYSL+A   IHAL F
Sbjct:   14 HNGWVTSLATSLENPNMLLSGSRDKSLIIWNLTRDETSYGYPKRRLHGHSHIVSDCVISSDGAYALSASWDKTLRLWELSTGTTTRRFVGHTNDVLSVSFSADNRQIVSGSRDRTIKLWNTLGDCKFTITE-KGHTEWVSCVRFSPNPQNPVIVSSGWDKLVKVWELSSCKLQTDHIGHTGYINAVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVF 241          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.215e-80
Identity = 143/230 (62.17%), Postives = 174/230 (75.65%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H   VT+IA   +N D I+++SRDK+++VW LT  + T  G A R L GHSHFVQDVV+S DGQFALSGSWD  LRLWD+ +G S R F GHT+DV+SVAFS DNRQI+S SRD TIK+WNTLGECK+T++  +AH +WVSC+RFSPNT  PTIVS SWD  VK+W++ + K   TL  HTGYVNTV +SPDGSLCASGGKD    LW+L+ GK LY L+A   I+AL F
Sbjct:   20 HNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAHRSLKGHSHFVQDVVISHDGQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSDNRQIISGSRDATIKVWNTLGECKFTLEGPEAHQDWVSCIRFSPNT--PTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAF 247          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 298.516 bits (763), Expect = 2.215e-80
Identity = 149/234 (63.68%), Postives = 175/234 (74.79%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDM-IVTASRDKSIIVWHLTK----EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            HT  VT IAT   N    ++++SRDK+I+VW +      +E   G   R LTGH+HFV DVV+SSDGQFALSGSWD  LRLWDL +G S R+F+ HTKDVLSVAFS DNRQIVS SRD++IKLWNTL +CKYTI + D HT+WVS VRFSP+   P IVSA WD+ VKVWNL NC+L+    GHTGYVNTV VSPDGSLCASGGKDG  +LWDL EGK LY+L    VI+A+ F
Sbjct:   15 HTGWVTQIATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPIGRPVRSLTGHNHFVSDVVISSDGQFALSGSWDKTLRLWDLNQGVSTRQFISHTKDVLSVAFSADNRQIVSGSRDKSIKLWNTLAQCKYTITD-DCHTDWVSTVRFSPSNRDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGNDVINAMSF 247          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 291.967 bits (746), Expect = 2.073e-78
Identity = 136/229 (59.39%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H+  VT+++T  +N D++++ SRDKSII+W+L +++  YGVA+RRLTGHSHFV D  LS D  +ALS SWD  +RLWDL +G+   +FVGHT DVLSV+ S DNRQ+VS SRD+TIK+WN +G CKYTI +G  H++WVSCVRFSPN    T VSA WD+ VKVW+L    LR +  GHTGYV+ V +SPDGSLCASGG+DG ++LWDL E   LYSL+A A I+AL F
Sbjct:   14 HSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDG-GHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVF 241          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 125/235 (53.19%), Postives = 160/235 (68.09%), Query Frame = 1
Query:    7 HTHLVTAIATPI--DNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H   VT++A P   + +  +V+ SRDK+++ W    +    E +YG+  RRL GHS FV DV LS++G FA+S SWD  LRLW+L  G+   +F+GHTKDVLSVAFS DNRQIVS  RD  +++WN  GEC +T+  G AHT+WVSCVRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CF
Sbjct:   12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 125/235 (53.19%), Postives = 160/235 (68.09%), Query Frame = 1
Query:    7 HTHLVTAIATPI--DNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H   VT++A P   + +  +V+ SRDK+++ W    +    E +YG+  RRL GHS FV DV LS++G FA+S SWD  LRLW+L  G+   +F+GHTKDVLSVAFS DNRQIVS  RD  +++WN  GEC +T+  G AHT+WVSCVRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CF
Sbjct:   12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.635e-57
Identity = 110/237 (46.41%), Postives = 151/237 (63.71%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            + H   VT++A P      I  V+ SRD ++I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + F
Sbjct:    8 KGHRGWVTSLACPQQAGSYIKVVSTSRDGTVISWKANPDRHSVDSDYGLPNHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIGF 243          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.494e-57
Identity = 110/237 (46.41%), Postives = 150/237 (63.29%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            + H   VT++A P      I  V+ SRD + I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + F
Sbjct:    8 KGHRGWVTSLACPQQAGSYIKVVSTSRDGTAISWKANPDRHSVDSDYGLPSHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAF 243          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.494e-57
Identity = 110/237 (46.41%), Postives = 150/237 (63.29%), Query Frame = 1
Query:    1 RAHTHLVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            + H   VT++A P      I  V+ SRD + I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + F
Sbjct:    8 KGHRGWVTSLACPQQAGSYIKVVSTSRDGTAISWKANPDRHSVDSDYGLPSHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAF 243          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 106/233 (45.49%), Postives = 147/233 (63.09%), Query Frame = 1
Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL----QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 693
            H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GHSH VQD  L++DG +ALS SWD  LRLWD+A G++ +RFVGH  DV+SV        I+S SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK WNL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + +L F
Sbjct:   16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245          
The following BLAST results are available for this feature:
BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
GBLP_NEUCR9.285e-8765.07Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DICDI2.215e-8062.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CAEEL2.215e-8063.68Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_SCHPO2.073e-7859.39Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBR1.180e-6553.19Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB1.180e-6553.19Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA2.635e-5746.41Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN4.494e-5746.41Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH4.494e-5746.41Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_YEAST4.651e-5445.49Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bp
CGCGCCCACACCCACTTGGTGACGGCGATCGCCACCCCAATCGACAACTC
TGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACC
TCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGC
CACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGC
TCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGG
GAAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTC
GCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTAC
GATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGG
GAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACG
CTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTG
GAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGAT
ACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGA
GGGAAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACT
CTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA
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