CF835550

Overview
NameCF835550
Unique NameCF835550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13759 contig Csv1_Contig13759:108..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: UTP12_YEAST (U3 small nucleolar RNA-associated protein 12 OS=Saccharomyces cerevisiae GN=DIP2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 52/206 (25.24%), Postives = 84/206 (40.78%), Query Frame = 1
Query:   58 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL-----------SSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 639
            +VT S DK++  W    E       + +         D  L           S D ++      D  ++++ L   K      GH   VLS+  S D++ I+++S D+ IK+W    G+C  ++    AH + +  V+F P +      S S D  VK W+    +    L  H   V  +AV+ DG    S   D  I +W+  E
Sbjct:  488 LVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSL---FAHQDSIMNVKFLPQS--HNFFSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETE 688          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 48/205 (23.41%), Postives = 88/205 (42.93%), Query Frame = 1
Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            +++ I+T   DK++IV+  + E+         L GHS  V  VV         S S D  +R+W +      +    H   V  ++       ++S+S D+     +       T    ++    ++C +F P+ L     + + D  +K+W+L      A   GH+G + ++A S +G   A+   D  + LWDL + K   +L
Sbjct:  234 DTNKILTGGADKNVIVFDKSSEQ-----ILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHPDGL--IFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTL 431          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 48/159 (30.19%), Postives = 70/159 (44.03%), Query Frame = 1
Query:  202 LSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 675
            L+   +G ++LWD        +F  H   V  + F       VS   D  IK+WN  L  C +T+     H +++    F      P I+SAS D+T++VWN  +      L GH  YV      P   L  S   D  + +WD++ G R  +L  GAV
Sbjct:   25 LTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLL---GHLDYIRTTFFHHE--YPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWDIS-GLRKKNLSPGAV 177          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: CIAO1_MOUSE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 53/197 (26.90%), Postives = 91/197 (46.19%), Query Frame = 1
Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627
            ++ +   D+ I +W     E    + +  L+ GH   V+ V  S  G +  S S+D    +W   +   +      GH  +V SVA++     + + SRD+++ +W    E +Y  +    +HT+ V  V + P+  Q  + SAS+D TVK++     +    ATL GH   V ++A  P G   AS   D  + +W
Sbjct:   30 LLASCGGDRKIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPS--QELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIW 221          
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: CIAO1_CHLRE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 54/206 (26.21%), Postives = 94/206 (45.63%), Query Frame = 1
Query:   52 DMIVTASRDKSIIVWHLTK---EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------LRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWD 630
            DM+ + S DK++ +W   +    E+ Y  A      H+  ++ V  S  G+   + S+D  + +W+L+ G  +      GH  +V  VA++ D R I +  RDR++ +W ++ G     +     H++ V  V + P+     +VSA +D T+K+W     +      L  T  GH   V  V   P   +  AS   D  + LW+
Sbjct:   29 DMLASCSGDKTVRIWSRRQPRPSEQWYCSAILDQC-HTRTIRSVAWSPTGRALATASFDATVAVWELSSGVWEQVAELEGHENEVKCVAWNPDGRLIATCGRDRSVWIWESMPGREFECVDVKQGHSQDVKAVTWHPS--GELLVSAGYDDTIKLWTYDGDEWGCAQTLGGTGTGHESTVWDVCWDPVSRARLASCSDDLTLRLWE 231          
The following BLAST results are available for this feature:
BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
UTP12_YEAST8.306e-1125.24U3 small nucleolar RNA-associated protein 12 OS=Sa... [more]
PRP19_CHICK8.306e-1123.41Pre-mRNA-processing factor 19 OS=Gallus gallus GN=... [more]
COPA_HUMAN8.306e-1130.19Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
CIAO1_MOUSE8.306e-1126.90Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CHLRE8.306e-1126.21Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bp
CGCGCCCACACCCACTTGGTGACGGCGATCGCCACCCCAATCGACAACTC
TGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACC
TCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGC
CACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGC
TCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGG
GAAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTC
GCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTAC
GATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGG
GAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACG
CTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTG
GAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGAT
ACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGA
GGGAAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACT
CTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA
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