CF835550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: UTP12_YEAST (U3 small nucleolar RNA-associated protein 12 OS=Saccharomyces cerevisiae GN=DIP2 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11 Identity = 52/206 (25.24%), Postives = 84/206 (40.78%), Query Frame = 1 Query: 58 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL-----------SSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 639 +VT S DK++ W E + + D L S D ++ D ++++ L K GH VLS+ S D++ I+++S D+ IK+W G+C ++ AH + + V+F P + S S D VK W+ + L H V +AV+ DG S D I +W+ E Sbjct: 488 LVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSL---FAHQDSIMNVKFLPQS--HNFFSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETE 688
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11 Identity = 48/205 (23.41%), Postives = 88/205 (42.93%), Query Frame = 1 Query: 46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660 +++ I+T DK++IV+ + E+ L GHS V VV S S D +R+W + + H V ++ ++S+S D+ + T ++ ++C +F P+ L + + D +K+W+L A GH+G + ++A S +G A+ D + LWDL + K +L Sbjct: 234 DTNKILTGGADKNVIVFDKSSEQ-----ILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHPDGL--IFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTL 431
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11 Identity = 48/159 (30.19%), Postives = 70/159 (44.03%), Query Frame = 1 Query: 202 LSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV 675 L+ +G ++LWD +F H V + F VS D IK+WN L C +T+ H +++ F P I+SAS D+T++VWN + L GH YV P L S D + +WD++ G R +L GAV Sbjct: 25 LTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLL---GHLDYIRTTFFHHE--YPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWDIS-GLRKKNLSPGAV 177
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: CIAO1_MOUSE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11 Identity = 53/197 (26.90%), Postives = 91/197 (46.19%), Query Frame = 1 Query: 55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 627 ++ + D+ I +W E + + L+ GH V+ V S G + S S+D +W + + GH +V SVA++ + + SRD+++ +W E +Y + +HT+ V V + P+ Q + SAS+D TVK++ + ATL GH V ++A P G AS D + +W Sbjct: 30 LLASCGGDRKIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPS--QELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIW 221
BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: CIAO1_CHLRE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11 Identity = 54/206 (26.21%), Postives = 94/206 (45.63%), Query Frame = 1 Query: 52 DMIVTASRDKSIIVWHLTK---EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG--KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------LRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWD 630 DM+ + S DK++ +W + E+ Y A H+ ++ V S G+ + S+D + +W+L+ G + GH +V VA++ D R I + RDR++ +W ++ G + H++ V V + P+ +VSA +D T+K+W + L T GH V V P + AS D + LW+ Sbjct: 29 DMLASCSGDKTVRIWSRRQPRPSEQWYCSAILDQC-HTRTIRSVAWSPTGRALATASFDATVAVWELSSGVWEQVAELEGHENEVKCVAWNPDGRLIATCGRDRSVWIWESMPGREFECVDVKQGHSQDVKAVTWHPS--GELLVSAGYDDTIKLWTYDGDEWGCAQTLGGTGTGHESTVWDVCWDPVSRARLASCSDDLTLRLWE 231 The following BLAST results are available for this feature:
BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bpback to top |