CF835550 | Citrus Genome Database

Overview


Name	CF835550
Unique Name	CF835550
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	694

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13759	contig	Csv1_Contig13759:108..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 73/222 (32.88%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++VTAS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVTASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTL 334

HSP 2 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 67/242 (27.69%), Postives = 109/242 (45.04%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTI------------------VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +   TI                  +S S D+T+K+W++S      TL GH  +V  V   P G    S   D  I +WD    + + +L+A
Sbjct:  147 KGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA 378

HSP 3 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        ++ S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 62/229 (27.07%), Postives = 107/229 (46.72%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQ--------------------IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  +       H   V  ++++ ++                      ++S SRD+TIK+W+ ++G C  T+     H  WV  V+F P      I+S + D+T+++W+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLV---GHDNWVRGVQFHPGG--KFILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

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BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 55/173 (31.79%), Postives = 95/173 (54.91%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 660
            L GH   V  V +S + ++  + S DG +++W     +      GH + +  V ++  ++ + SAS D+TI++W+    C     +G  HT +VS + F+P  L   +VS SWD TV++WNL +      L  H+  + +V++S DG+LCA+   DG+  +WD+  G+ L +L
Sbjct:   50 LFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKG--HTNYVSSIDFNP--LGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQCLKTL 218

HSP 2 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 1

Query:  274 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG---ECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            GH K V  V+ S + R I ++S D TIK+W+ L    EC  +    G +  +W +  ++        + SAS D+T+++W+    C +R  L GHT YV+++  +P G+L  SG  D  + +W+L +G  L  L A
Sbjct:   52 GHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKY--------LASASDDKTIRIWDFEKRCSVRC-LKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPA 178

HSP 3 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 1

Query:   49 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQE 399
            S  + +AS DK+I +W   K       + R L GH+++V  +  +  G   +SGSWD  +R+W+L +G   R    H++ ++SV+ S D     +AS D   ++W+ L G+C  T+ E
Sbjct:  108 SKYLASASDDKTIRIWDFEKR-----CSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVE 220

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BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 64/242 (26.45%), Postives = 108/242 (44.63%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378

HSP 3 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 64/242 (26.45%), Postives = 108/242 (44.63%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378

HSP 3 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGFVDQTVKVWE 408

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 64/242 (26.45%), Postives = 108/242 (44.63%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378

HSP 3 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 64/242 (26.45%), Postives = 108/242 (44.63%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378

HSP 3 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTL 334

HSP 2 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 63/241 (26.14%), Postives = 105/241 (43.57%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTI------------------VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  V  I+       ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +   TI                  +S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSVQDISFD-HTGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDFKNKRCMKTLNA 378

HSP 3 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 62/229 (27.07%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQ--------------------IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  +       H   V  ++++ ++                      ++S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDFKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 66/224 (29.46%), Postives = 109/224 (48.66%), Query Frame = 1

Query:    4 AHTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA 672
            AH+  V  +A    +  ++VT   DK + +W + K+          L+GH+  V  V  +S  +  ++GS  G ++++DL   K  R   GH   +  + F      + S S D  +KLW+   + C YT +    H++ V+ ++FSP+     +V+AS D T+K+W+L+  KL      HTG V  +   P+  L ASG  D  +  WDL   + + S   GA
Sbjct:   14 AHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIIS-----LSGHTSPVDSVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYK---GHSDQVNMIKFSPDG--KWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGA 227

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 57/189 (30.16%), Postives = 97/189 (51.32%), Query Frame = 1

Query:   46 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 609
            + +++V  S+  ++ ++ L   +       R LTGH + ++ +     G+F  SGS D  ++LWD+        + GH+  V  + FS D + +V+AS D TIKLW+ T+G+     QE   HT  V+ + F PN     + S S DRTV+ W+L   +L ++ +     V +++  PDGS      +D
Sbjct:   70 SEELVVAGSQSGTMKIYDLEPAKIV-----RTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGK---LFQEFKNHTGGVTGIEFHPNEF--LLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLFCSSQD 248

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 61/184 (33.15%), Postives = 92/184 (50.00%), Query Frame = 1

Query:  100 LTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 651
            L   +K      + L GHS  V     S D ++ LSGS D  +RLW +    +   + GH   V  V+FS       +AS D+T +LW+   +  Y ++    H   V CV F PN     + + S D+T ++W++S         GHT  V ++AV PDG   ++G +DG+I +WD+  GKRL
Sbjct:  507 LNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSC--DHIYPLRIFAGHLNDVDCVSFHPNGCY--VFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRL 686

HSP 2 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 58/215 (26.98%), Postives = 96/215 (44.65%), Query Frame = 1

Query:    1 RAHTHLVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 633
            + H H V  ++ +P+ +     TAS D++  +W     +  Y +  R   GH + V  V    +G +  +GS D   R+WD++ G S R F+GHT  V+S+A   D R + + S D  I +W+ +G  K   Q        +  + +S       ++S   D TV+VW+L       +        GY+  V  S +  +   G +  VI   DL
Sbjct:  564 KGHNHPVWDVSFSPLGH--YFATASHDQTARLWSC---DHIYPL--RIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWD-IGTGKRLKQMRGHGKNAIYSLSYSKE--GNVLISGGADHTVRVWDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDL 768

[Close]

BLAST of CF835550 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 71/222 (31.98%), Postives = 105/222 (47.30%), Query Frame = 1

Query:   55 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL 660
            ++V+AS D +I VW     +   G   R L GH+  +QD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 64/242 (26.45%), Postives = 108/242 (44.63%), Query Frame = 1

Query:    1 RAHTHLVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA 666
            + HT  +  I  P D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G    S   D  + +WD    + + +L+A
Sbjct:  147 KGHTDSIQDI--PFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378

HSP 3 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 1

Query:  142 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 636
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  +  + F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L AS   D  + +W +A
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

HSP 4 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1

Query:    7 HTHLVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 630
            H H V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +G  D  + +W+
Sbjct:  191 HDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

The following BLAST results are available for this feature:

BLAST of CF835550 vs. ExPASy Swiss-Prot

BLAST of CF835550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415


Match Name	E-value	Identity	Description
LIS1A_XENLA	2.107e-22	32.88	Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf...	[more]
SWD3_SCHPO	3.594e-22	31.79	Set1 complex component swd3 OS=Schizosaccharomyces...	[more]
LIS1_RAT	4.694e-22	32.43	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PANTR	4.694e-22	32.43	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_MOUSE	4.694e-22	32.43	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_HUMAN	4.694e-22	32.43	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_CHICK	4.694e-22	32.43	Platelet-activating factor acetylhydrolase IB subu...	[more]
KTNB1_STRPU	4.694e-22	29.46	Katanin p80 WD40-containing subunit B1 OS=Strongyl...	[more]
TAF5_YEAST	6.131e-22	33.15	Transcription initiation factor TFIID subunit 5 OS...	[more]
LIS1_PONAB	6.131e-22	31.98	Platelet-activating factor acetylhydrolase IB subu...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS03_01H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835550 ID=CF835550; Name=CF835550; organism=Citrus sinensis; type=EST; length=694bp
CGCGCCCACACCCACTTGGTGACGGCGATCGCCACCCCAATCGACAACTC
TGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGTCTGGCACC
TCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTTTGACCGGC
CACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGCCAGTTCGC
TCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTTGGCCGAGG
GAAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTCTCTCCGTC
GCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTAC
GATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGG
GAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACG
CTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTG
GAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGAT
ACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGA
GGGAAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACT
CTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA