CF835556

Overview
NameCF835556
Unique NameCF835556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:837..1571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  246 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 563
            LV+CM+V  P++  AI+CG V+G L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:   12 LVMCMIVA-PMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.585e-31
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = -3
Query:  246 LKLVSALVLCMLVTGPLSA-QAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 581
            +KL   ++ CM+V GP++A +A+TCG V+ ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AAR++ P+LN   AAG+P ACGVS+P+ IST+T+C+ V+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = -3
Query:  246 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 578
            K+   +VLCM+V  P  A+AITCGQV+ +LAPC+ +LR+ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = -3
Query:  249 VSALVLCM-LVTGPLSAQAITCGQVSGSLAPCIGFLRS--GGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 572
            V+ +V+ M L T P +   +TCGQV+G+LAPC+G+LRS    P+P+ CCN VR LN AARTT D++TAC CLKQ A ++  LNLN AAGLP  CGV+IPYKIS +TDC++V
Sbjct:    9 VAMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = -3
Query:  246 LKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 581
            +KL   +  CM+V GP+++ A ++CG VSG +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.752e-30
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  246 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 518
            ITCGQVS +LAPCI +++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ + SIP +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  249 LKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 581
            + ++   V CM+ +    A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:    6 MNVLCVAVACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  246 QMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 593
            Q+  L  + A++ CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:    6 QLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  249 MAALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 590
            MA  +LV  ALV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  249 MAALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 590
            MA  +LV  ALV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF835556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP5_LENCU1.214e-3162.62Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTPA_BRAOT1.585e-3153.51Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_TOBAC4.612e-3159.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_DAUCA6.023e-3158.56Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTPD_BRAOT1.027e-3054.39Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_PRUDO1.752e-3062.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_GERHY5.099e-3054.05Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_PRUDU1.136e-2952.54Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ORYSJ1.136e-2956.52Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.136e-2956.52Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835556 ID=CF835556; Name=CF835556; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTAAGTCGTTTACTGAACACAAGGCAAGATTTCATTTAATAAACA
GACCTTACACAAACTGACGATGACATGAAAAGCAAAGACAATAAAACATA
ACATGAAACGAGGGCGCGAACGAGACTCGCAGTACAAAGTGTAGAGAGAG
ACTCATAAATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTAC
TCCGTCAACTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGA
CCTTAGAGCAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCA
CAAGCTCCTGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGA
TCTGGCGGCTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGG
TTCTGGCGGCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGT
ATAGGGCCGCCCGATCTCAAGAAACCGATGCATGGTGCCAATGAGCCACT
CACCTGCCCACATGTTATGGCCTGAGCACTCAGGGGACCAGTCACCAACA
TGCACAGAACCAAAGCTGAAACAAGCTTGAGGGCAGCCATTTGAGATTTC
TGCTGAGTTCACGAGGCAGGGACTCCGAGTCAGGTGTCTTCAGCGATTAG
TCACGCCATGGCTACAGGACAGCTGTTTTCAAAAACCACACAAGCTTTGT
TTTACAACTATAAGCAGCTTTCCATCCAACGGA
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