CF835556

Overview
NameCF835556
Unique NameCF835556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:837..1571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = -3
Query:  249 AALKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 587
            A L LV+ +   +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = -3
Query:  246 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 578
            K+   ++LCM+V  P  A+A+TCGQV+  LAPC+ +L+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 64/116 (55.17%), Postives = 79/116 (68.10%), Query Frame = -3
Query:  249 MAALKLVS-ALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 590
            MA  +LV  ALV  +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    1 MARAQLVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = -3
Query:  249 AALKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 587
            A L LV+ +   +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 66/117 (56.41%), Postives = 76/117 (64.96%), Query Frame = -3
Query:  246 MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNA--AGLPGACGVSIPYKISTSTDCSKVR 590
            MA    V  L+L   + G  +A AITCGQV   L  C+G+ R GG IP  CC GVR+LN  A+TTPDRQTACNCLK      PSL LN A  AG+PG CGV+IPY I   TDC+KVR
Sbjct:    1 MARSSAVCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  249 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 587
            A +K   ALV+CM+V  PL A+AITCG V+  LAPCIG+L+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   AA LP  CGVS+PY IS +T+C+ +
Sbjct:    5 AFVKFTCALVMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = -3
Query:  246 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 578
            K+   ++LCM+V  P  A+A+TCGQV+ +LAPC+ +L + GP+   CC GV+ L   A+TT DRQTAC CLK AA S   L+L  AA LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  246 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 578
            K+   +V CM+V  P  A++++CG+V+  LAPC+ +L   GP+   CC GV+ L  AA+T  DR+TAC CLK AA SI  ++   AAGLPG CGV+IPYKIS STDCS V+
Sbjct:    6 KIACFVVFCMVVVAP-HAESLSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  246 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 578
            K+   ++LCM+V  P  A+A+TCGQV+ +LAPC+ +L + GP+   CC GV+ L   A+TT DRQ AC CLK AA S   L+L  AA LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CF835556 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  249 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 518
            ++CG V+  LAPCI +LRS GP+P+ CCNGV++L  +A TT DR+TAC CL  A++SI  +N   AAGLPG CGV+IPYKIS ST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CF835556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_ORYSI6.233e-2853.51Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_SOLPN6.233e-2853.15Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLT2B_ORYSJ6.233e-2855.17Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ6.233e-2853.51Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
SCA_LILLO8.140e-2856.41Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_BETVU1.063e-2752.21Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP2_SOLPN1.063e-2754.95Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_SOLLC4.040e-2752.25Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_SOLCI6.891e-2754.05Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP5_VITSX9.000e-2758.89Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835556 ID=CF835556; Name=CF835556; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTAAGTCGTTTACTGAACACAAGGCAAGATTTCATTTAATAAACA
GACCTTACACAAACTGACGATGACATGAAAAGCAAAGACAATAAAACATA
ACATGAAACGAGGGCGCGAACGAGACTCGCAGTACAAAGTGTAGAGAGAG
ACTCATAAATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTAC
TCCGTCAACTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGA
CCTTAGAGCAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCA
CAAGCTCCTGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGA
TCTGGCGGCTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGG
TTCTGGCGGCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGT
ATAGGGCCGCCCGATCTCAAGAAACCGATGCATGGTGCCAATGAGCCACT
CACCTGCCCACATGTTATGGCCTGAGCACTCAGGGGACCAGTCACCAACA
TGCACAGAACCAAAGCTGAAACAAGCTTGAGGGCAGCCATTTGAGATTTC
TGCTGAGTTCACGAGGCAGGGACTCCGAGTCAGGTGTCTTCAGCGATTAG
TCACGCCATGGCTACAGGACAGCTGTTTTCAAAAACCACACAAGCTTTGT
TTTACAACTATAAGCAGCTTTCCATCCAACGGA
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