CF835562

Overview
NameCF835562
Unique NameCF835562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.903e-91
Identity = 163/222 (73.42%), Postives = 186/222 (83.78%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+E+IR AQRAEG AT++AI TATPPNCV Q+ YPDYYF ITNSEH              SMI+KR+M LTEEILK NP +C +M  SLDARQD+ +VEVPKLGKEAATKAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEDIRRAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKAELKEKFKRMCDKSMIKKRYMYLTEEILKENPQVCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.163e-90
Identity = 163/222 (73.42%), Postives = 187/222 (84.23%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV++EEIR AQRAEG AT++AI TATPPNCV Q+ YPDYYF ITNSEHMT            SMI+KR+M L EEILK NP++C +M  SLDARQD+ ++EVPKLGKEAATKAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVSVEEIRQAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVMEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.163e-90
Identity = 163/222 (73.42%), Postives = 187/222 (84.23%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV++EEIR AQRAEG AT++AI TATPPNCV Q+ YPDYYF ITNSEHMT            SMI+KR+M L EEILK NP++C +M  SLDARQD+ ++EVPKLGKEAATKAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVMEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.519e-90
Identity = 167/222 (75.23%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV++ EIR AQRAEG ATILAI TATP NCV Q+ YPDYYF ITNSEHMT            SMI+KR+M L EEILK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTATPSNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHLNEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: ACS3_RUTGR (Probable acridone synthase 3 OS=Ruta graveolens GN=ACS3 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.519e-90
Identity = 164/222 (73.87%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            M +++E+R AQ +EG A ILAI TA P N  +QADYPDYYF +T SEHMT            SMIRKRHMC +EE LKANP +C HMG SL+ARQDI++VE P+LG EAA KAIKEWGQPKS+ITHLIFC+SAGVDMPGADYQLTR++GLNP VKRMMIYQQGCYAG T+LRLAKDLAENNKGSRVLVVCSE T PTFRGPS   +DSLVGQALFADGAAAL
Sbjct:    1 MESLKEMRKAQMSEGPAAILAIGTANPDNVYMQADYPDYYFKMTKSEHMTELKDKFRTLCEKSMIRKRHMCFSEEFLKANPEVCKHMGKSLNARQDIAVVETPRLGNEAAVKAIKEWGQPKSSITHLIFCSSAGVDMPGADYQLTRILGLNPSVKRMMIYQQGCYAGGTVLRLAKDLAENNKGSRVLVVCSELTAPTFRGPSPDAVDSLVGQALFADGAAAL 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.590e-90
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG AT++AI TA PPNCV QA YPDYYF ITNSEH              S I+KR+M L EE+LK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATVMAIGTAVPPNCVDQATYPDYYFRITNSEHKAELKEKFQRMCDKSQIKKRYMYLNEEVLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.771e-90
Identity = 162/222 (72.97%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI TATP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 7.537e-90
Identity = 164/222 (73.87%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EEIR AQRAEG ATI+AI TATP NCV Q+ YPDYYF ITNSEH T            SMI+KR+M LTEEILK NPN+C +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL   VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEIRRAQRAEGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAAAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.537e-90
Identity = 165/221 (74.66%), Postives = 182/221 (82.35%), Query Frame = 3
Query:   72 VTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            VT+EEIR AQRA+G AT+LAI TATP N V QADYPDYYF IT SEHMT            SMIRKR+M LTEEILK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPG DYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN+G+RVLVVCSE T  TFRGP  TH+DSLVGQALF DGAAA+
Sbjct:    4 VTVEEIRKAQRADGPATVLAIGTATPANYVTQADYPDYYFRITKSEHMTDLKEKFKRMCDKSMIRKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAAKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPVDTHLDSLVGQALFGDGAAAV 224          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.843e-90
Identity = 163/224 (72.77%), Postives = 184/224 (82.14%), Query Frame = 3
Query:   63 SEMVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            S    MEEIRNAQRAEG ATILAI TATP NCVIQADYPD+YF ITNSEH T            SMI+KR+M LTE++LK NP MC +M  SLDARQD+ +VE+ KLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+ G T+LRLAKDLAENN+G+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAAL
Sbjct:    2 SSAALMEEIRNAQRAEGPATILAIGTATPANCVIQADYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYMHLTEDLLKENPKMCEYMAPSLDARQDMVVVEIRKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFPGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAL 225          
The following BLAST results are available for this feature:
BLAST of CF835562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS1_CAMSI8.903e-9173.42Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHS5_SOYBN1.163e-9073.42Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS2_SOYBN1.163e-9073.42Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHSY_PHAVU1.519e-9075.23Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]
ACS3_RUTGR1.519e-9073.87Probable acridone synthase 3 OS=Ruta graveolens GN... [more]
CHSY_HYPAN2.590e-9072.52Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHS6_IPOBA5.771e-9072.97Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHSJ_PETHY7.537e-9073.87Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHS3_RUTGR7.537e-9074.66Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_CHRAE9.843e-9072.77Chalcone synthase OS=Chrysosplenium americanum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835562 ID=CF835562; Name=CF835562; organism=Citrus sinensis; type=EST; length=736bp
CGCGAAAGCGCACACTTATTAATTAACTAAGTTTAAGTACTGTTTTGGAA
GCAATCTGACGATCAGAGATGGTAACCATGGAGGAGATTAGAAACGCTCA
GCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGC
CCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACC
AACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGA
GAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAA
AAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGC
CAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAAC
CAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCA
TTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTC
ACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCA
ACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATTTGG
CTGAAAACAACAAGGGCTCTCGTGTTCTTGTTGTTTGTTCTGAGAACACA
ATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTCTTTAGTGGG
TCAGGCTCTTTTCGCTGATGGGGCTGCTGCACTGAT
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