CF835562

Overview
NameCF835562
Unique NameCF835562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 9.843e-90
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            M ++EEIR AQRA G AT+LAI TATP NC+ QADYPDYYF IT S+HMT            SMI+KR+M L EEIL  NPNMC +M  SLDARQ I +VEVPKLGKEAATKAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MASVEEIRKAQRAHGPATVLAIGTATPSNCITQADYPDYYFRITKSDHMTELKEKFKRMCDKSMIKKRYMYLNEEILNENPNMCAYMAPSLDARQTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.843e-90
Identity = 163/222 (73.42%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE R AQRAEG ATILAI T+TP NCV Q+ YPDYYF ITNSEH T            SMI+KR+M LTEEILK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPG DYQL +L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS +H+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: ACS4_RUTGR (Probable acridone synthase 4 OS=Ruta graveolens GN=ACS4 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.843e-90
Identity = 163/222 (73.42%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            M +++E+R AQ +EG A ILAI TATP N  +QADYPDYYF +T SEHMT            SMIRKRHMC +EE LKANP +  HMG SL+ARQDI++VE P+LG EAA KAIKEWGQPKS+ITHLIFC+SAGVDMPGADYQLTR++GLNP VKRMM+YQQGCYAG T+LRLAKDLAENNKGSRVLVVCSE T PTFRGPS   +DSLVGQALFADGAAAL
Sbjct:    1 MESLKEMRKAQMSEGPAAILAIGTATPNNVYMQADYPDYYFRMTKSEHMTELKDKFRTLCEKSMIRKRHMCFSEEFLKANPEVSKHMGKSLNARQDIAVVETPRLGNEAAVKAIKEWGQPKSSITHLIFCSSAGVDMPGADYQLTRILGLNPSVKRMMVYQQGCYAGGTVLRLAKDLAENNKGSRVLVVCSELTAPTFRGPSPDAVDSLVGQALFADGAAAL 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.286e-89
Identity = 161/222 (72.52%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRA+G ATI+AI T+TP NCV Q+ YPDYYF ITNSEH+             SMI+KR+M LTEEILK NPN+C +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T++RLAKDLAENNKG+RVLVVCSE T  TFRGPS  H+DSLVGQALF DGAAAL
Sbjct:    1 MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILKENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAL 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.286e-89
Identity = 161/222 (72.52%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI T TP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL+P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLSPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.679e-89
Identity = 162/222 (72.97%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV++EEIR AQRAEG AT++AI TATPPNCV Q+ YPDYYF ITNS+HM             SMI+KR+M L EEILK NP++C +M  SLDARQD+ +VEVPKLGKEAATKAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN G+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSDHMNELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMEPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNTGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.679e-89
Identity = 161/222 (72.52%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI T TP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKERFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.679e-89
Identity = 161/222 (72.52%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRA+G ATI+AI TATP NCV Q+ YPDYYF ITNSEHMT            SMI KR+M LTEEILK NPN+C +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T++RLAKDLAENNKG+RVLVVCSE T  TF GPS TH+DS+VGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFSGPSDTHLDSMVGQALFGDGAAAM 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.193e-89
Identity = 160/222 (72.07%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI T TP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++G+DMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.193e-89
Identity = 163/221 (73.76%), Postives = 182/221 (82.35%), Query Frame = 3
Query:   72 VTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            VT+EEIR AQRA+G A +LAI TATP N V QADYPDYYF IT SEHMT            SMIRKR+M LTE+ILK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPG DYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN+G+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    4 VTVEEIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYMYLTEDILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 224          
The following BLAST results are available for this feature:
BLAST of CF835562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_BETVE9.843e-9072.52Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSB_SOLTU9.843e-9073.42Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
ACS4_RUTGR9.843e-9073.42Probable acridone synthase 4 OS=Ruta graveolens GN... [more]
CHSE_IPONI1.286e-8972.52Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS2_IPOBA1.286e-8972.52Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS6_SOYBN1.679e-8972.97Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS4_IPOBA1.679e-8972.52Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS2_SOLTU1.679e-8972.52Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS8_IPOBA2.193e-8972.07Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS2_RUTGR2.193e-8973.76Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835562 ID=CF835562; Name=CF835562; organism=Citrus sinensis; type=EST; length=736bp
CGCGAAAGCGCACACTTATTAATTAACTAAGTTTAAGTACTGTTTTGGAA
GCAATCTGACGATCAGAGATGGTAACCATGGAGGAGATTAGAAACGCTCA
GCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGC
CCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACC
AACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGA
GAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAA
AAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGC
CAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAAC
CAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCA
TTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTC
ACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCA
ACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATTTGG
CTGAAAACAACAAGGGCTCTCGTGTTCTTGTTGTTTGTTCTGAGAACACA
ATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTCTTTAGTGGG
TCAGGCTCTTTTCGCTGATGGGGCTGCTGCACTGAT
back to top