CF835563

Overview
NameCF835563
Unique NameCF835563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 2
Query:   26 YPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQ---VDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVY 553
            +PPS   F   L    + P+L FL+ T+SYLMVN YP+  Y  +   I LDYALF+  P     VD+   ++YSN FDA +DA + AM+ +++ ++ V+VTE+GWPS G+ NE              L+R VL+ +GTP RP   ++ Y++ L+NE+ K G  SE+N+GLF  N + VY
Sbjct:  172 FPPSQAFFNRSL-NAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATYFAMAFLNFTNIPVLVTESGWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAG-LSEKNWGLFNANGEPVY 348          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 2
Query:    8 GALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYP 535
            GAL  S+PPS GSFKSD     L  ++ FL   ++ LMVN Y +FAY+AN   ISLDYALFR +P  V     L Y NLFDA +DAV+AA+       + +VV+E+GWPS G                  LVR V    GTP RP  PL  Y+FA+F+ENQKQ P  E+ +GLF P
Sbjct:  167 GALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFR-SPSVVVQDGSLGYRNLFDASVDAVYAALEKAGGGSLNIVVSESGWPSSGG---TATSLDNARTYNTNLVRNV--KQGTPKRPGAPLETYVFAMFDENQKQ-PEFEKFWGLFSP 335          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 74/185 (40.00%), Postives = 105/185 (56.76%), Query Frame = 2
Query:   14 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSAN-ADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            + NS+PPSSG F+       L P+  FL  T +  + N YP+FAY  +    I L+YA  +      D+GNGL Y++LFDA +D+++AA+      +V+VVV+E+GWPS G                   +R     SGTP RP   +  Y+FA+FNEN+K G   ERN+GLF+PN+Q VY + F
Sbjct:  139 ITNSFPPSSGVFRDP---SGLVPIARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGGFGASVENARNYNQGLIDHIR-----SGTPKRP-GAIETYIFAMFNENRKPGDEVERNFGLFFPNKQPVYPTTF 314          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 75/182 (41.21%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NS+PPS GSF++D +   + P++ F+R+ +S L+VN YP+F+Y+ N   ISL YALF   P  V     L Y NLFDA  DAV+AA+S      +++VV+E+GWPS G                   V+R     G+P RP   +  YLFA+F+EN K  P  E+++GLF PN+Q  Y   F
Sbjct:  173 NSFPPSQGSFRND-VRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTA-PNVVVQDGSLGYRNLFDAMSDAVYAALSRAGGGSIEIVVSESGWPSAGAFAATTNNAATYYKNLIQHVKR-----GSPRRPNKVIETYLFAMFDENNK-NPELEKHFGLFSPNKQPKYPLSF 346          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 74/207 (35.75%), Postives = 110/207 (53.14%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRD---NPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKS 613
            A   + +++PPS   F        + P+L+FL KT S LM+N YP++ Y  N   + LD  LF     +   VD    L Y+N+ DA +DA + +M  ++ +DV V+VTE+GWPS GD  E              L++ V   +GTPL P+   +VY++ LFNE+ +  P SE ++GLFY N   VY    VS SG   +    N++
Sbjct:   67 AASIMLDTFPPSQAYFNQTW-HSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRAPPVSEASWGLFYGNSTPVY-LLHVSGSGTFLANDTTNQT 271          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 79/186 (42.47%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    8 GALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            G L  ++PPS GSFKS+     L P++ FL    S L+VN YP+FAYS N   I LDYALF      V  GN   Y NLFDA LD V+AA+       +KVV++ETGWPS                    L++ V    GTP RP  P+  Y+FA+F+EN+K  P  E+++GLF P +Q  Y   F
Sbjct:  172 GVLGETFPPSIGSFKSEY-NALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGN-FGYRNLFDAMLDGVYAALEKAGGGSLKVVISETGWPSAAG---TATTIDNARTFISNLIQHV--KEGTPRRPGRPIETYIFAMFDENRKT-PELEKHWGLFSPTKQPKYQISF 349          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 78/193 (40.41%), Postives = 110/193 (56.99%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAM-SAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTS 577
            A   L  SYPPS G+F S+   P + P++  L  + + L+VN YP+FAYSA+   + LDYAL   +     + NG++Y+N+FDA LDAV+AA+  A     +++VV+ETGWPS G                  LVR V    GTP RP   +  Y+FA+FNENQK     E+N+G+F P+   VY   F ++S
Sbjct:  135 ATSVLGTSYPPSQGTF-SEAALPTVGPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAVEKAGGGESLELVVSETGWPSGG--GGYGASVENAAAYINNLVRHV---GGTPRRPGKAVETYIFAMFNENQKPEGV-EQNFGMFQPDMSQVYHVDFTASS 320          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 74/182 (40.66%), Postives = 103/182 (56.59%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NS+PPS+G FK+  +    +     L  T + L+ N YP+FAY  N   ISL+YA F+      D  NGL Y++LFDA +DAV+AA+       VKVVV+E+GWPS G                  L+  V  G GTP + ++ L  Y+FA+FNENQK G  +ER++GLF P++   Y+  F
Sbjct:  163 NSFPPSAGVFKNAYMTDVAR----LLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNIQF 334          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 2
Query:   14 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQV-DSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            + NS+PPSS  F     +P +  +   L  T++ L+ N YP+FAYS N   I L+YA F+     V D+GNGL Y+NLF+A +DA++AA+       V+VVV+E+GWPS G                  L+  V    GTP +P   +  Y+FA+FNENQK G  +ER++GLFYPN++ VY   F
Sbjct:  134 ITNSFPPSSAVFA----QPYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGG---FAATPENARAYNQGLIDHV--AHGTPKKP-GHMEAYVFAMFNENQKPGLETERHFGLFYPNKRPVYHINF 308          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NSYPPS GSF+ D +   L P++ +L   S+ L VN YP+F+YS N   ISL YALF  +P  V       Y NLFDA LD+V AA+       V+VVV+E+GWPS G                  LVRR  +G G+P RP  P   Y+FA+F+ENQK  P  E+++GLF P+++  Y   F
Sbjct:  142 NSYPPSQGSFRGD-VRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALFT-SPNVVVRDGQYGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGG---FGATYDNARVYLDNLVRR--AGRGSPRRPSKPTETYIFAMFDENQK-SPEIEKHFGLFKPSKEKKYPFGF 315          
The following BLAST results are available for this feature:
BLAST of CF835563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E132_ARATH5.231e-3341.34Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13A_SOYBN1.522e-3247.16Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13E_HORVU4.896e-3140.00Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
GUB_NICPL1.425e-3041.21Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E131_ARATH1.861e-3035.75Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13B_PRUPE2.430e-3042.47Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13F_HORVU3.174e-3040.41Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13B_HORVU3.174e-3040.66Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13D_HORVU4.145e-3041.08Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_PHAVU7.071e-3043.41Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835563 ID=CF835563; Name=CF835563; organism=Citrus sinensis; type=EST; length=650bp
TGCTTTAGGTGCCTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCA
AATCGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGT
AAGACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTC
TGCTAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATC
CCGGTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGAC
GCCCAACTCGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGA
CGTGAAGGTTGTGGTGACGGAGACTGGATGGCCGTCTATGGGTGACGAGA
ATGAGGCGGGTGCTGGTGCGGCCAATGCCGCGGCGTACAACGGGAATCTA
GTACGTAGAGTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAAGGACCC
ACTTAACGTTTACCTCTTCGCTTTGTTCAATGAGAATCAAAAACAGGGTC
CCACATCGGAAAGGAATTACGGGTTGTTTTATCCCAACGAACAGACGGTG
TACGACTCGCCGTTTGTGTCAACTAGTGGGAACTCAAGCTCAACGCCGGC
AGCCAATAAGAGCAAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTG
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