CF835563

Overview
NameCF835563
Unique NameCF835563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7095 contig Csv1_Contig7095:638..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 68/187 (36.36%), Postives = 103/187 (55.08%), Query Frame = 2
Query:    8 GALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFV 568
            G L N+YPP    F+ +L +  + P++EFL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+                 LV  V  G+GTP +P   +  YLFA+F+EN+KQG  +E+++GLFYPN    Y   F+
Sbjct:  170 GLLANTYPPKDSIFREEL-KSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQ-----ETNSTGYQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIIETYLFAMFDENEKQGEITEKHFGLFYPNRAAKYQLNFM 347          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.206e-29
Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YALF   P  V      +Y NLFDA LD+V+AAM       V +VV+E+GWPS G                  L++    GS  P +P  P+  Y+FA+F+EN K  P  E+++GLF PN+Q  Y+  F
Sbjct:  141 NSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTA-PNAVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKEGS--PRKP-GPIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNF 313          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YALF   P  V      +Y NLFDA LD+V+AAM       V +VV+E+GWPS G                  L++    GS  P +P  P+  Y+FA+F+EN K  P  E+++GLF PN+Q  Y+  F
Sbjct:  132 NSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTA-PNVVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKEGS--PRKP-GPIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNF 304          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 72/184 (39.13%), Postives = 106/184 (57.61%), Query Frame = 2
Query:   14 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            L  SYPPS+GSF SD     + P++ FL +  S L+ N YP+F+Y+ +   I LDYALF  +   V  G+  +Y NLFDA LDA++AA+     +++K+VV+E+GWPS G                   V+      GTP R    +  YLFA+F+ENQK G  +E+++GLF P++++ Y   F
Sbjct:  110 LGTSYPPSAGSFSSDA-SSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALFTASGVVVQDGS-YQYQNLFDALLDALYAALEKAGGSNLKIVVSESGWPSEGGTAATVDNARTYYKNLINHVK-----GGTP-RKSGAIETYLFAMFDENQKTGLETEKHFGLFTPSQESKYQISF 285          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 76/182 (41.76%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YALF   P  V      +Y NLFDA LD+V+AAM       V +VV+E+GWPS G                  L++    GS  P +P  P+  Y+FA+F+EN K  P  E+++G+F PN+Q  Y+  F
Sbjct:  167 NSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTA-PNVVVQDGSRQYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAG---AFGATHENAQTYLRNLIQHAKEGS--PRKP-GPIETYIFAMFDENNK-NPELEKHFGMFSPNKQPKYNLNF 339          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 77/182 (42.31%), Postives = 104/182 (57.14%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            NSYPPS GSF++D +     P++ FLR T + L+VN YP+F+YS N  +ISL YALF   P  V      +Y NLFDA LD+V+AAM       V +VV+E GWPS G                  L++    GS  P +P  P+  Y+FA+F+EN K  P  E+++GLF PN+Q  Y+  F
Sbjct:  167 NSYPPSQGSFRND-VRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTA-PNVVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWPSAG---AFGATQDNAATYLRNLIQHAKEGS--PRKP-GPIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNF 339          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 77/192 (40.10%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSST 595
            NSYPPS+G+F+ D +   L P++ FL    S L+ N YP+F Y+ N   ISL YALF  +P  V       Y NLFDA LDA+++A+   S   ++VVV+E+GWPS G                  L++ V    GTP RP   +  YLFA+F+EN+KQ P  E+++GLF+PN+   Y+  F +      ST
Sbjct:  178 NSYPPSAGAFRDD-VRSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALFT-SPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAG---AFAATFDNGRTYLSNLIQHV--KGGTPKRPNRAIETYLFAMFDENKKQ-PEVEKHFGLFFPNKWQKYNLNFSAEKNWDIST 361          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 79/193 (40.93%), Postives = 113/193 (58.55%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF-VSTSGNSSST 595
            NSYPPS GSF++D     + P++ FLR T + L+VN YP+F+YS N  +ISL Y+LF   P  V      +Y NLFDA LD+V+AA+       V +VV+E+GWPS G                  L++    GS  P +P+ P+  Y+FA+F+EN K  P  E+++GLF PN+Q  Y+  F VS S  +++T
Sbjct:  175 NSYPPSQGSFRNDA-RWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTA-PNVVVQDGSRQYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLKNLIQHAKEGS--PRKPR-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVSGSVETNAT 358          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 2
Query:    8 GALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFV 568
            G L N+YPP    F+ +  +  + P++EFL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+                 LV  V  G+GTP +P   +  YLFA+F+EN+K G  +E+++GLFYPN    Y   F+
Sbjct:  170 GLLANTYPPKDSIFREEF-KSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQ-----GTNSTGYQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIVETYLFAMFDENEKNGEVTEKHFGLFYPNRTAKYQLNFM 347          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 79/202 (39.11%), Postives = 112/202 (55.45%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQV 625
            NSYPPS GSF++D       P++ FLR T + L+VN YP+F+YS N  +ISL Y+LF   P  V      +Y NLFDA LD+V+AA+       V +VV+E+GWPS G                  L++    GS  P +P  P+  Y+FA+F+EN K  P  E+++GLF PN+Q  Y+  F  + G   S+   N + + V
Sbjct:  176 NSYPPSQGSFRNDA-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTA-PNVVVQDGSRQYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKEGS--PRKP-GPIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNINFGVSGGVWDSSVETNATASLV 368          
The following BLAST results are available for this feature:
BLAST of CF835563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13D_TOBAC9.234e-3036.36Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E131_SOLTU1.206e-2942.31Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E133_SOLTU1.575e-2942.31Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13B_VITVI2.687e-2939.13Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13B_SOLLC2.687e-2941.76Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E132_SOLTU2.687e-2942.31Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E13B_HEVBR3.509e-2940.10Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_NICPL5.986e-2940.93Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13C_TOBAC1.021e-2835.29Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_TOBAC1.021e-2839.11Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835563 ID=CF835563; Name=CF835563; organism=Citrus sinensis; type=EST; length=650bp
TGCTTTAGGTGCCTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCA
AATCGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGT
AAGACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTC
TGCTAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATC
CCGGTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGAC
GCCCAACTCGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGA
CGTGAAGGTTGTGGTGACGGAGACTGGATGGCCGTCTATGGGTGACGAGA
ATGAGGCGGGTGCTGGTGCGGCCAATGCCGCGGCGTACAACGGGAATCTA
GTACGTAGAGTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAAGGACCC
ACTTAACGTTTACCTCTTCGCTTTGTTCAATGAGAATCAAAAACAGGGTC
CCACATCGGAAAGGAATTACGGGTTGTTTTATCCCAACGAACAGACGGTG
TACGACTCGCCGTTTGTGTCAACTAGTGGGAACTCAAGCTCAACGCCGGC
AGCCAATAAGAGCAAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTG
back to top