CF835563

Overview
NameCF835563
Unique NameCF835563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 55/186 (29.57%), Postives = 92/186 (49.46%), Query Frame = 2 
Query:   14 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK--QGPTSERNYGLFYPNEQTVYDSPF 565
            L  S  PSSG F++DL +  ++ +L FL K  S   V   PF ++  N + ISLD++LF++       G    Y N FD   D + +A+  I +++V +VV++ GWP+ G EN                + +      T   P+ P+  Y+ +L +E+Q+       ER++G+F  + Q  Y+  F
Sbjct:  168 LSESGRPSSGHFRADLNKTMIE-LLSFLTKHHSPFFVTISPFLSFHQNKN-ISLDFSLFKETAKAHKDGRKT-YRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDGAENATSLTAEAFFKGLIVHLEK-----KTASLPRPPVETYIESLLDEDQRNLSAGNFERHWGVFTFDGQAKYNFSF 345
The following BLAST results are available for this feature:
BLAST of CF835563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E139_ARATH2.441e-1429.57Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835563 ID=CF835563; Name=CF835563; organism=Citrus sinensis; type=EST; length=650bp
TGCTTTAGGTGCCTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCA
AATCGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGT
AAGACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTC
TGCTAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATC
CCGGTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGAC
GCCCAACTCGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGA
CGTGAAGGTTGTGGTGACGGAGACTGGATGGCCGTCTATGGGTGACGAGA
ATGAGGCGGGTGCTGGTGCGGCCAATGCCGCGGCGTACAACGGGAATCTA
GTACGTAGAGTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAAGGACCC
ACTTAACGTTTACCTCTTCGCTTTGTTCAATGAGAATCAAAAACAGGGTC
CCACATCGGAAAGGAATTACGGGTTGTTTTATCCCAACGAACAGACGGTG
TACGACTCGCCGTTTGTGTCAACTAGTGGGAACTCAAGCTCAACGCCGGC
AGCCAATAAGAGCAAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTG
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