CF835577

Overview
NameCF835577
Unique NameCF835577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:900..1696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.556e-70
Identity = 126/164 (76.83%), Postives = 141/164 (85.98%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L +YAPVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  269 LVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 5.914e-70
Identity = 120/164 (73.17%), Postives = 142/164 (86.59%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L +Y+P++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV +IK++RTIQFVDWCPTGFK GI Y+PP  VPG  +AKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  273 LVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 436          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.723e-70
Identity = 121/164 (73.78%), Postives = 143/164 (87.20%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L++ AP++S +KA HE  SVAE+T S FEP + M KCDPR GKYMAC L+YRGDVVPKD NAAVA IKTKRTIQFVDWCPTGFK GI  +PP  VPGGDLAKV+R++CM+SN+T+++  +SR+DHKFDL+Y+KRAFVHWYVGEGMEEGEFSEAR+DLAALEKDY
Sbjct:  268 LATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEKDY 431          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.721e-69
Identity = 113/164 (68.90%), Postives = 146/164 (89.02%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            ++++AP++SA+KAYHEQ SV++IT + FE S+ + KCDPR GKYMACCL+YRGDVVPK+VNAA+A  K++ ++QFVDWCPTGFK GIN +PPTV+PGGDLAKV R++CM+SN+T++ E ++R+DHKFDLMYAKRAF+HWY+ EGMEE EF EAREDLAALE+DY
Sbjct:  276 MTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDY 439          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.935e-69
Identity = 119/164 (72.56%), Postives = 143/164 (87.20%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L++YAPVISA++A+HE LSV +IT+  FE ++ M KCDP  GKYMA CL+YRGDVVPKDVNAA++++K KR I FVDWCPTGFK GINYQ P  V GGDLAKV RAVCM+SN+T++AE ++R+DHKFDLMY+KRAFVHW+VGEGMEEGEF EAR+DLAALEKDY
Sbjct:  272 LATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDY 435          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.006e-69
Identity = 120/164 (73.17%), Postives = 140/164 (85.37%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L +YAP++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV TIK KRTIQFVDWCPTGFK GI  +PP  + G ++AKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  269 LVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.902e-68
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L +Y+PVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQ P  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLM++KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  269 LVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.229e-68
Identity = 123/164 (75.00%), Postives = 138/164 (84.15%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L +YAPVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+Y GDVVP D +AAVA++KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEARE LAALE DY
Sbjct:  269 LVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALEADY 432          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.781e-66
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L+SYAP++SA +  HEQ SV E+T S FE  + M KCD + GKYMACCL+YRGDVVPKD  AAVA+IKTKRTIQFVDWCPTGFK G+  + P  VPGGDLAKV R++CM+SN+T++A  ++R+D+KFDLMY KRAFVHWYVGE MEEGEFSEAREDLAALEKDY
Sbjct:  267 LASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDLAALEKDY 430          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.781e-66
Identity = 116/164 (70.73%), Postives = 134/164 (81.71%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L SY+PV+S  KA+HE  SV+EITN+ FEP + M KCDPR GKYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PPT  P   LA V RAVCM+SN+TS+AE + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  270 LVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TBA2_NEUCR1.556e-7076.83Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA1_SCHPO5.914e-7073.17Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBAA_SCHCO7.723e-7073.78Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBAL3_HUMAN1.721e-6968.90Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA8_CAEEL2.935e-6972.56Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA2_SCHPO5.006e-6973.17Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_GIBZE1.902e-6875.00Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_SORMA7.229e-6875.00Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBAB_SCHCO1.781e-6671.34Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_YEAST1.781e-6670.73Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTAGACAACCCCCGAAGCTATGTTGTAAATTGAAATAAGATAACC
CTATAAAAATCAAACAGTCAAAGATTACATGAACATATACCTTCCATAAA
CTTGATAAGCATAACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCA
AAGAGAGGAATAAGGTTTTCAACACAAAATAAAGGCACGAAGCGTCACTA
AAGCACAAGACATCATACTAAAACGCACAGATAATTGCACACTTAGATCC
CTCAGTCCTCCTCACCATAATCTTCCTCGCCCTCGGCAGACTCTGCACCC
ACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGAGCCTCAGA
GAACTCTCCTTCTTCCATACCCTCGCCAACATACCAGTGGACGAAAGCAC
GCTTTGCATACATAAGATCAAACTTGTGGTCAATGCGAGAGAACACCTCT
GCCACACTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGC
AAGGTCACCACCAGGAACAACAGTTGGTGGCTGGTAGTTGATACCACACT
TGAACCCAGTCGGGCACCAGTCGACGAATTGGATTGTACGCTTGGTCTTG
ATGGTAGCAACAGCTGCATTGACATCCTTGGGCACAACATCACCACGGTA
CATGAGGCAGCAAGCCATGTACTTGCCATGACGAGGATCACATTTGGCCA
TCATAGATGAGGGCTCAAAGGCACTGTTGGTGATCTCAGCAACTGAGAGT
TGTTCATGGTAGGCCTTCTCAGCTGAGATGACTGGTGCATAGGAGGAAAG
CAT
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