CF835577
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4) HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27 Identity = 58/164 (35.37%), Postives = 93/164 (56.71%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 L +AP+ S + L+V E+T F+ +MMA DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 LVGFAPLTSRGSVGYRSLTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27 Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 MPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/161 (34.78%), Postives = 92/161 (57.14%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------KGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/161 (34.78%), Postives = 92/161 (57.14%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMCTSDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------LGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/161 (34.78%), Postives = 92/161 (57.14%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------KGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/161 (34.78%), Postives = 93/161 (57.76%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V+E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 153
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T F+ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ + C I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 245 FAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 397
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 56/164 (34.15%), Postives = 94/164 (57.32%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 + +AP+ + + L+VAE+T F+ +MMA CDPRHG+Y+ M+RG + ++V+ + ++ K + FV+W P K + PP ++ A + NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 MPGFAPLSAKGTQAYRALTVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422 The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 380
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bpback to top |