CF835577
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + LSV E+T ++ +MM DPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + + P G ++ A I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + + P G + A I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 261 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 413
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = -1 Query: 330 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PPT ++ A + NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 418
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP + + + NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = -1 Query: 330 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PPT ++ A + NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 418
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25 Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 + P+ S + L+V E+T F+ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FVPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25 Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 ++P+ + + +++ EIT AF+ +MM CD R G+Y+ C +RG V KDV + + + K + QFV+W P + PP ++ +V I NST++ +VF RI +F M+ ++AF+HWY GEGM+E EF+EA +L L +Y Sbjct: 270 FSPLTARGSQSYRAVTIPEITQQAFDSKNMMTACDTRLGRYLTCAAYFRGKVSMKDVEDQMQSFQQKHSTQFVEWIPNNVQTAQCDIPPR--------GLKMSVTFIGNSTAIQDVFKRIAEQFSAMFKRKAFLHWYTGEGMDEMEFTEAESNLQDLIAEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25 Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +M+ DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ A I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA D+ L +Y Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMVCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPI--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVSEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25 Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ + + NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------IGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25 Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ + I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 272 FAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKTSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 424 The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 380
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bpback to top |