CF835577

Overview
NameCF835577
Unique NameCF835577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  LSV E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +      + P G    ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +      + P G    +  A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  261 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 413          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = -1
Query:  330 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 418          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = -1
Query:  330 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 418          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            + P+ S     +  L+V E+T   F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FVPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            ++P+ +     +  +++ EIT  AF+  +MM  CD R G+Y+ C   +RG V  KDV   + + + K + QFV+W P   +      PP          ++ +V  I NST++ +VF RI  +F  M+ ++AF+HWY GEGM+E EF+EA  +L  L  +Y
Sbjct:  270 FSPLTARGSQSYRAVTIPEITQQAFDSKNMMTACDTRLGRYLTCAAYFRGKVSMKDVEDQMQSFQQKHSTQFVEWIPNNVQTAQCDIPPR--------GLKMSVTFIGNSTAIQDVFKRIAEQFSAMFKRKAFLHWYTGEGMDEMEFTEAESNLQDLIAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +M+   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  D+  L  +Y
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMVCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPI--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------IGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 54/161 (33.54%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  272 FAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKTSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 424          
The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TBB4_ARATH2.601e-2534.78Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_PEA2.601e-2534.16Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_SOLTU2.601e-2534.42Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB2_MAIZE2.601e-2532.92Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB1_SOLTU2.601e-2534.42Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB1_CYAPA2.601e-2532.30Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_USTMA3.397e-2534.78Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB9_GOSHI3.397e-2533.54Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB7_MAIZE3.397e-2532.92Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB6_GOSHI3.397e-2533.54Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTAGACAACCCCCGAAGCTATGTTGTAAATTGAAATAAGATAACC
CTATAAAAATCAAACAGTCAAAGATTACATGAACATATACCTTCCATAAA
CTTGATAAGCATAACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCA
AAGAGAGGAATAAGGTTTTCAACACAAAATAAAGGCACGAAGCGTCACTA
AAGCACAAGACATCATACTAAAACGCACAGATAATTGCACACTTAGATCC
CTCAGTCCTCCTCACCATAATCTTCCTCGCCCTCGGCAGACTCTGCACCC
ACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGAGCCTCAGA
GAACTCTCCTTCTTCCATACCCTCGCCAACATACCAGTGGACGAAAGCAC
GCTTTGCATACATAAGATCAAACTTGTGGTCAATGCGAGAGAACACCTCT
GCCACACTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGC
AAGGTCACCACCAGGAACAACAGTTGGTGGCTGGTAGTTGATACCACACT
TGAACCCAGTCGGGCACCAGTCGACGAATTGGATTGTACGCTTGGTCTTG
ATGGTAGCAACAGCTGCATTGACATCCTTGGGCACAACATCACCACGGTA
CATGAGGCAGCAAGCCATGTACTTGCCATGACGAGGATCACATTTGGCCA
TCATAGATGAGGGCTCAAAGGCACTGTTGGTGATCTCAGCAACTGAGAGT
TGTTCATGGTAGGCCTTCTCAGCTGAGATGACTGGTGCATAGGAGGAAAG
CAT
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