CF835577

Overview
NameCF835577
Unique NameCF835577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 54/161 (33.54%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLTMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  +   I NSTS+ E+F R+  +F  M+  +AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQQYRTLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRPKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RDLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+     +RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGSQMYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPP--------RGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  309 LSSYAPVIS-AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            +  +AP+ S   + Y + LSVA++T   F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  F++W P   K  I   PP          ++ +V  I N+T + E+F R+  +F  M+ ++ F+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  268 MMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPP--------KGLKMSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEFTEAESNMNDLVSEY 424          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  +++K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L  YAP+ +        L+V E+T   F+  +MMA  DPRHG+Y+     +RG +  K+V+  +  ++TK +  FV+W P   K  +   PP          ++ +   I N+T + E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  267 LIGYAPLTARSAMGFRALTVPELTQQIFDSRNMMAASDPRHGRYLTASATFRGKMSTKEVDEQMHAVQTKNSSFFVEWIPNNIKSSVCDIPP--------KGMKMSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            L  +AP+ +   + + +++V E+T   F+  +MMA  DP +GKY+    ++RG +  K+V+  +  I+TK +  FV+W P   K  I   PP   P         AV  I N+T++ ++F RI   F  M+ ++AF+HWY  EGMEE EF+EA  ++  L  +Y
Sbjct:  272 LVGFAPLTAKGASSYNRITVPELTQQMFDAKNMMAASDPHNGKYLTASALFRGKIFTKEVDEQMHNIQTKNSSYFVEWIPHNIKSSICDIPPKGTP--------MAVTFIGNNTAIQDLFKRISIHFQAMFRRKAFLHWYTLEGMEELEFTEAESNMNDLVYEY 427          
The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TBB3_ELEIN3.397e-2533.54Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB2_DAUCA3.397e-2533.54Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB_ACRCO4.437e-2534.16Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB4_WHEAT4.437e-2532.92Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB_METAN5.795e-2534.16Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_LEIME5.795e-2532.73Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_EPITY5.795e-2534.16Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=... [more]
TBB_CEPAC5.795e-2534.16Tubulin beta chain OS=Cephalosporium acremonium GN... [more]
TBB2_PHYPO5.795e-2534.15Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB_DICDI7.568e-2534.76Tubulin beta chain OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTAGACAACCCCCGAAGCTATGTTGTAAATTGAAATAAGATAACC
CTATAAAAATCAAACAGTCAAAGATTACATGAACATATACCTTCCATAAA
CTTGATAAGCATAACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCA
AAGAGAGGAATAAGGTTTTCAACACAAAATAAAGGCACGAAGCGTCACTA
AAGCACAAGACATCATACTAAAACGCACAGATAATTGCACACTTAGATCC
CTCAGTCCTCCTCACCATAATCTTCCTCGCCCTCGGCAGACTCTGCACCC
ACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGAGCCTCAGA
GAACTCTCCTTCTTCCATACCCTCGCCAACATACCAGTGGACGAAAGCAC
GCTTTGCATACATAAGATCAAACTTGTGGTCAATGCGAGAGAACACCTCT
GCCACACTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGC
AAGGTCACCACCAGGAACAACAGTTGGTGGCTGGTAGTTGATACCACACT
TGAACCCAGTCGGGCACCAGTCGACGAATTGGATTGTACGCTTGGTCTTG
ATGGTAGCAACAGCTGCATTGACATCCTTGGGCACAACATCACCACGGTA
CATGAGGCAGCAAGCCATGTACTTGCCATGACGAGGATCACATTTGGCCA
TCATAGATGAGGGCTCAAAGGCACTGTTGGTGATCTCAGCAACTGAGAGT
TGTTCATGGTAGGCCTTCTCAGCTGAGATGACTGGTGCATAGGAGGAAAG
CAT
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