CF835577

Overview
NameCF835577
Unique NameCF835577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.427e-23
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S+  A    L +AE+T   F+P ++M   D R G+++ C  M+RG V  K V   +  IK K +  FV+W P   +      PP    G D++        I NST++   F R+  +F LM+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSS--ASFSNLGIAELTQQMFDPKNVMLASDFRDGRFLTCSTMFRGKVSMKQVEEQIQAIKNKNSANFVEWIPNNIQTAHCSVPPK---GLDVSST-----FIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 420          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 52/161 (32.30%), Postives = 91/161 (56.52%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T   F+  +MM  C+ ++G+++ C  ++RG +  K+V+  + +I TK +  FV+W P   +  +   PP          ++ +   + NSTSV E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAQSFRAMSVPELTQQMFDSRNMMTACNFQNGRFLTCSALFRGKISMKEVDDQMLSIHTKNSGYFVEWIPNNVQTALCSVPPK--------GLKMSATFVGNSTSVQELFQRVATQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLMSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = -1
Query:  351 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ ++  A +  LSV E+    F+ ++MMA+ DPR G+Y+   + +RG V  K+V   +  ++TK +  FV+W P   K  +   P         A  + +   I N+T++   F R  ++F  M+ ++AF+HWY  EGM+E EFSEA  +LA L  +Y
Sbjct:  272 HAPLAASNSAGYRSLSVPELAGQMFDRNNMMAEIDPREGRYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIP--------AAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNLADLVSEY 424          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        +SV E+T    +P +MMA  D R+G+Y+ C  ++RG V  K+V   + +I+ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSPGAHSFRAVSVPELTQQMLDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRSIQNKNSTYFVEWIPNNIQTALCSIPP--------KGLKISSTFVGNSTAIQEIFRRVGEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.153e-23
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            YAP+ +  +     L+V E+T   F+  +MMA  DP+ G+Y+     +RG V  K+V   + +++ + +  FV+W P   +  I   PP          V+ +   I+NSTS+ E+F R+  +F  M+ ++AF+HWY  EGM+  EF+EA  ++  L  +Y
Sbjct:  270 YAPLSAPGQQSFRSLTVPELTQQLFDSKNMMAASDPKRGRYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPPK--------DVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+    ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTSSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.251e-23
Identity = 51/164 (31.10%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            +  +AP+ S     +  L+VAE+T   F+  +M A  DPRHG+Y+    +++G +  ++V+  +  I+ K +  F DW P   K  I   PP          ++ +   I N+ ++ E+F+ +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  195 MPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPP--------RGLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 350          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.251e-23
Identity = 51/161 (31.68%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ +     +  ++V E+T+  F+  +MMA  DPRHG+Y+     +RG V  K+V   + +++ K +  FV+W P      +      + P       + +V  I NST++ ++F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  270 FAPLTARGSQQYRAITVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPNN----VQTAHCDIAPRAH----KMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = -1
Query:  309 PVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 785
            P+ +     +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP           + AV  + NST++ E+F R++ +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  272 PLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPPR--------GCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEY 422          
The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TBB1_COLGR1.427e-2335.40Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB_ASPFU1.864e-2332.30Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB3_SOYBN1.864e-2334.69Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB1_CHOCR1.864e-2334.16Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB1_TRIVE2.435e-2332.30Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV... [more]
TBB1_GEOCN4.153e-2332.30Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_VENIN7.083e-2332.30Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
YI016_HUMAN9.251e-2331.10Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_UROFA9.251e-2331.68Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB_PLESA2.061e-2232.08Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTAGACAACCCCCGAAGCTATGTTGTAAATTGAAATAAGATAACC
CTATAAAAATCAAACAGTCAAAGATTACATGAACATATACCTTCCATAAA
CTTGATAAGCATAACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCA
AAGAGAGGAATAAGGTTTTCAACACAAAATAAAGGCACGAAGCGTCACTA
AAGCACAAGACATCATACTAAAACGCACAGATAATTGCACACTTAGATCC
CTCAGTCCTCCTCACCATAATCTTCCTCGCCCTCGGCAGACTCTGCACCC
ACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGAGCCTCAGA
GAACTCTCCTTCTTCCATACCCTCGCCAACATACCAGTGGACGAAAGCAC
GCTTTGCATACATAAGATCAAACTTGTGGTCAATGCGAGAGAACACCTCT
GCCACACTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGC
AAGGTCACCACCAGGAACAACAGTTGGTGGCTGGTAGTTGATACCACACT
TGAACCCAGTCGGGCACCAGTCGACGAATTGGATTGTACGCTTGGTCTTG
ATGGTAGCAACAGCTGCATTGACATCCTTGGGCACAACATCACCACGGTA
CATGAGGCAGCAAGCCATGTACTTGCCATGACGAGGATCACATTTGGCCA
TCATAGATGAGGGCTCAAAGGCACTGTTGGTGATCTCAGCAACTGAGAGT
TGTTCATGGTAGGCCTTCTCAGCTGAGATGACTGGTGCATAGGAGGAAAG
CAT
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