CF835578 | Citrus Genome Database

Overview


Name	CF835578
Unique Name	CF835578
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	784

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CF835578_ssr521	microsatellite	CF835578_ssr521:521..532.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113	contig	Csv1_Contig1113:1..784.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.322e-34
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E  RLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGER-RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.726e-34
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD G+SS+AM IMNSF+NDIFE++A EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   33 ESYGIYIYKVLKQVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.254e-34
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ET+ +YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L RYNKK T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 113

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.944e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 134

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135

[Close]

BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = -1

Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138

The following BLAST results are available for this feature:

BLAST of CF835578 vs. ExPASy Swiss-Prot

BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205


Match Name	E-value	Identity	Description
H2B1_RAT	1.322e-34	81.11	Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2	[more]
H2BE1_PSAMI	1.726e-34	78.89	Histone H2B.1, embryonic OS=Psammechinus miliaris ...	[more]
H2B_EUPCR	2.254e-34	76.67	Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1	[more]
H2B_GIBZE	2.944e-34	77.78	Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3	[more]
H2B_ROSNE	3.846e-34	77.78	Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV...	[more]
H2B_PODAN	3.846e-34	77.78	Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=...	[more]
H2B_NEUCR	3.846e-34	77.78	Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4	[more]
H2B_NEOFI	3.846e-34	77.78	Histone H2B OS=Neosartorya fischeri (strain ATCC 1...	[more]
H2B_MAGGR	3.846e-34	77.78	Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=...	[more]
H2B_EMENI	3.846e-34	77.78	Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT