CF835578

Overview
NameCF835578
Unique NameCF835578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835578_ssr521 microsatellite CF835578_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_PICST (Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.567e-34
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_CANAL (Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 8.567e-34
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_LODEL (Histone H2B OS=Lodderomyces elongisporus GN=HTB1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.119e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++RE+QTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREVQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_CANAL (Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.119e-33
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_USTMA (Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI++VLKQVHPD GIS+KAM I+NSF+ DIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct:   52 ETYSTYIYRVLKQVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTKFSSS 141          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_DEBHA (Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 127          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_SCHPO (Histone H2B-alpha OS=Schizosaccharomyces pombe GN=htb1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGELAKHAV+EGTK+VTK++SS
Sbjct:   35 ETYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTKYSSS 124          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_DEBHA (Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_AGABI (Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 68/89 (76.40%), Postives = 82/89 (92.13%), Query Frame = -1
Query:  236 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 502
            ETY  YI+KVLKQVHPD GIS+KAM I+NSF+NDIFE++A EAS+LA Y+KK TI+SREIQT+VRL+LPGELAKHA+SEGTK+VTKF+S
Sbjct:   52 ETYSSYIYKVLKQVHPDTGISNKAMAILNSFVNDIFERIATEASKLASYSKKSTISSREIQTSVRLILPGELAKHAISEGTKSVTKFSS 140          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2BS1_PSAMI (Histone H2B.1, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 66/90 (73.33%), Postives = 82/90 (91.11%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EA RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   47 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEAGRLTTYNRRNTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 136          
The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_PICST8.567e-3476.67Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1[more]
H2B2_CANAL8.567e-3476.67Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=... [more]
H2B_LODEL1.119e-3375.56Histone H2B OS=Lodderomyces elongisporus GN=HTB1 P... [more]
H2B1_CANAL1.119e-3376.67Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=... [more]
H2B_USTMA1.461e-3375.56Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3[more]
H2B2_DEBHA1.461e-3376.67Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=... [more]
H2B1_SCHPO1.461e-3376.67Histone H2B-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2B1_DEBHA1.461e-3376.67Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=... [more]
H2B_AGABI1.909e-3376.40Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3[more]
H2BS1_PSAMI1.909e-3373.33Histone H2B.1, sperm OS=Psammechinus miliaris PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT
back to top