CF835578

Overview
NameCF835578
Unique NameCF835578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835578_ssr521 microsatellite CF835578_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2BS1_PARAN (Histone H2B.1, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 66/90 (73.33%), Postives = 82/90 (91.11%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EA RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   55 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIAAEAGRLTTYNRRSTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 144
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_CANGA (Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_ASHGO (Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   35 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 124
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_CANGA (Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   37 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 126
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_ASHGO (Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_TETPY (Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 67/90 (74.44%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ET+ IYIFKVLKQVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   30 ETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 119
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_YEAST (Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_TETTH (Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 67/90 (74.44%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ET+ IYIFKVLKQVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   31 ETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_YEAST (Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_TETTH (Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 67/90 (74.44%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ET+ IYIFKVLKQVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   31 ETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120
The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BS1_PARAN1.909e-3373.33Histone H2B.1, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_CANGA1.909e-3375.56Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=... [more]
H2B2_ASHGO1.909e-3375.56Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3[more]
H2B1_CANGA1.909e-3375.56Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=... [more]
H2B1_ASHGO1.909e-3375.56Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3[more]
H2B_TETPY2.493e-3374.44Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2[more]
H2B2_YEAST2.493e-3375.56Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 ... [more]
H2B2_TETTH2.493e-3374.44Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 P... [more]
H2B1_YEAST2.493e-3375.56Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 ... [more]
H2B1_TETTH2.493e-3374.44Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT
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