CF835578

Overview
NameCF835578
Unique NameCF835578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835578_ssr521 microsatellite CF835578_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_YARLI (Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = -1
Query:  236 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 502
            ETY  YI+KVLKQ HPD GIS++AM IMNSF+NDIFE++A EAS+LA Y KK TITSREIQTAVRL+LPGELAKHA  +GT+AV K+++
Sbjct:   48 ETYSSYIYKVLKQTHPDTGISTRAMSIMNSFVNDIFERVATEASKLATYTKKSTITSREIQTAVRLILPGELAKHATGDGTRAVAKYST 136          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+    IFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 53/87 (60.92%), Postives = 77/87 (88.51%), Query Frame = -1
Query:  242 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 502
            + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL+ Y K+ T++SREI+ AVRLVLPGEL++HAV+EG+KAV+ F
Sbjct:  149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNF 235          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_TRYCR (Histone H2B OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  236 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 499
            T+ +YI + LK ++  + +S + M I+NSF+ND+FE++A EA+ + R NKK T+ +RE+QTAVRLVLP +LAKHA++EGTKAV+  +S
Sbjct:   25 TWNVYINRSLKSINNHMSMSGRTMKIVNSFVNDLFERIACEAATVVRVNKKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS 112          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_ENTIV (Histone H2B OS=Entamoeba invadens PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = -1
Query:  245 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 508
            + ++Y +YI +VLK V PDIGI+  ++ +M+SF+ DIFE++A +AS L R  +K T+T++EI+TA +L+L G+L KHAVSEG  AV +
Sbjct:   35 NFDSYALYISRVLKSVFPDIGITLPSISVMDSFVRDIFERIAMDASSLTRNYQKSTLTTKEIETATKLILKGDLNKHAVSEGQSAVKR 122          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_LEIEN (Histone H2B OS=Leishmania enriettii PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 41/84 (48.81%), Postives = 66/84 (78.57%), Query Frame = -1
Query:  248 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 499
            ++ +Y+ + LK ++  + +S + M I+NS++ND+ E++A EA+ + R +KK T+ +RE+QTAVRLVLP ELAKHA++EGTKAV+
Sbjct:   24 SWNVYVSRSLKAINSHMSMSGRTMKIVNSYVNDVMERIAMEAASIVRAHKKLTLGAREVQTAVRLVLPPELAKHAMAEGTKAVS 107          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -1
Query:  329 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 502
            E+Y IY++KVLK+VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2C_HUMAN (Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -1
Query:  329 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 502
            E+Y IY++KVLK+VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2BV3_DICDI (Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = -1
Query:  242 TYKIYIFKVLKQVHPDIG------------ISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 499
            ++  YI K+LKQ+ P               ISSKAM +MNSF++DIF+++A EAS LA+  K+ T+ SR+IQ AVR++L GELAKHA+ +G  AV K+
Sbjct:   50 SFSTYIHKLLKQITPPTNAKSNEKGDRKFTISSKAMSVMNSFVHDIFDRIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQGMTAVNKY 147          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_LILLO (Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 45/87 (51.72%), Postives = 67/87 (77.01%), Query Frame = -1
Query:  236 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 496
            Y++YI +VL QV P++GISSK+M IMN+F+   F+ +A+EAS LA+Y+KK TIT +E++ AV+LVLP +L ++A  +G +AV  F S
Sbjct:   54 YRVYIRRVLTQVRPELGISSKSMLIMNNFVVHNFQNIAKEASILAQYSKKKTITVKELKAAVKLVLPHQLLEYADRDGDRAVHNFES 140          
The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_YARLI3.979e-3171.91Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV... [more]
H2B_PHANO3.979e-3173.91Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 ... [more]
H2B2_ARATH1.730e-2660.92Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170... [more]
H2B_TRYCR7.041e-2052.27Histone H2B OS=Trypanosoma cruzi PE=3 SV=1[more]
H2B_ENTIV2.675e-1950.00Histone H2B OS=Entamoeba invadens PE=2 SV=1[more]
H2B_LEIEN3.863e-1848.81Histone H2B OS=Leishmania enriettii PE=2 SV=1[more]
H2B2D_HUMAN3.863e-1874.14Putative histone H2B type 2-D OS=Homo sapiens GN=H... [more]
H2B2C_HUMAN3.863e-1874.14Putative histone H2B type 2-C OS=Homo sapiens GN=H... [more]
H2BV3_DICDI6.590e-1847.96Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv... [more]
H2B_LILLO8.607e-1851.72Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT
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