CF835578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_YARLI (Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV=3) HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31 Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = -1 Query: 236 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 502 ETY YI+KVLKQ HPD GIS++AM IMNSF+NDIFE++A EAS+LA Y KK TITSREIQTAVRL+LPGELAKHA +GT+AV K+++ Sbjct: 48 ETYSSYIYKVLKQTHPDTGISTRAMSIMNSFVNDIFERVATEASKLATYTKKSTITSREIQTAVRLILPGELAKHATGDGTRAVAKYST 136
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31 Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = -1 Query: 233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502 ETY YI+KVLKQVHPD GIS++AM I+NSF+ IFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS Sbjct: 47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26 Identity = 53/87 (60.92%), Postives = 77/87 (88.51%), Query Frame = -1 Query: 242 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 502 + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL+ Y K+ T++SREI+ AVRLVLPGEL++HAV+EG+KAV+ F Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNF 235
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_TRYCR (Histone H2B OS=Trypanosoma cruzi PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20 Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = -1 Query: 236 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 499 T+ +YI + LK ++ + +S + M I+NSF+ND+FE++A EA+ + R NKK T+ +RE+QTAVRLVLP +LAKHA++EGTKAV+ +S Sbjct: 25 TWNVYINRSLKSINNHMSMSGRTMKIVNSFVNDLFERIACEAATVVRVNKKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS 112
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_ENTIV (Histone H2B OS=Entamoeba invadens PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19 Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = -1 Query: 245 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 508 + ++Y +YI +VLK V PDIGI+ ++ +M+SF+ DIFE++A +AS L R +K T+T++EI+TA +L+L G+L KHAVSEG AV + Sbjct: 35 NFDSYALYISRVLKSVFPDIGITLPSISVMDSFVRDIFERIAMDASSLTRNYQKSTLTTKEIETATKLILKGDLNKHAVSEGQSAVKR 122
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_LEIEN (Histone H2B OS=Leishmania enriettii PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18 Identity = 41/84 (48.81%), Postives = 66/84 (78.57%), Query Frame = -1 Query: 248 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 499 ++ +Y+ + LK ++ + +S + M I+NS++ND+ E++A EA+ + R +KK T+ +RE+QTAVRLVLP ELAKHA++EGTKAV+ Sbjct: 24 SWNVYVSRSLKAINSHMSMSGRTMKIVNSYVNDVMERIAMEAASIVRAHKKLTLGAREVQTAVRLVLPPELAKHAMAEGTKAVS 107
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -1 Query: 329 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 502 E+Y IY++KVLK+VHPD GI KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR Sbjct: 36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2C_HUMAN (Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -1 Query: 329 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 502 E+Y IY++KVLK+VHPD GI KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR Sbjct: 36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2BV3_DICDI (Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv3 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = -1 Query: 242 TYKIYIFKVLKQVHPDIG------------ISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 499 ++ YI K+LKQ+ P ISSKAM +MNSF++DIF+++A EAS LA+ K+ T+ SR+IQ AVR++L GELAKHA+ +G AV K+ Sbjct: 50 SFSTYIHKLLKQITPPTNAKSNEKGDRKFTISSKAMSVMNSFVHDIFDRIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQGMTAVNKY 147
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_LILLO (Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18 Identity = 45/87 (51.72%), Postives = 67/87 (77.01%), Query Frame = -1 Query: 236 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 496 Y++YI +VL QV P++GISSK+M IMN+F+ F+ +A+EAS LA+Y+KK TIT +E++ AV+LVLP +L ++A +G +AV F S Sbjct: 54 YRVYIRRVLTQVRPELGISSKSMLIMNNFVVHNFQNIAKEASILAQYSKKKTITVKELKAAVKLVLPHQLLEYADRDGDRAVHNFES 140 The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 205
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bpback to top |