CF835578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4) HSP 1 Score: 171.785 bits (434), Expect = 3.837e-42 Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+ Sbjct: 51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.011e-42 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41 Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = -1 Query: 233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541 +GD S+ETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 44 AGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 46 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.458e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.458e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.458e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 1.458e-41 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -1 Query: 233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508 S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS Sbjct: 45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136 The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 205
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bpback to top |