CF835578

Overview
NameCF835578
Unique NameCF835578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835578_ssr521 microsatellite CF835578_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 6.125e-40
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = -1
Query:  233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508
            S+ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = -1
Query:  236 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 508
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = -1
Query:  236 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 508
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = -1
Query:  236 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 508
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   65 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = -1
Query:  236 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 508
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.845e-37
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = -1
Query:  236 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 499
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.845e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.845e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = -1
Query:  233 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT6.125e-4090.22Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE1.365e-3987.91Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE1.365e-3987.91Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE1.365e-3987.91Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE1.365e-3987.91Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA3.040e-3988.89Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA3.040e-3988.89Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA2.845e-3790.91Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE2.845e-3783.33Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN2.845e-3783.33Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835578 ID=CF835578; Name=CF835578; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT
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