CF835593

Overview
NameCF835593
Unique NameCF835593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = -1
Query:  289 EIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 708
            E V T+PTIGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D L   I  +
Sbjct:   37 EFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 58/133 (43.61%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  310 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 708
            E+V T  TIG NVE +  +   F +WD+GGQ+ +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML  + L++A +L+FANKQD+ ++M  AEI+  L L +++   W+IQ  CA +GEGL  GL W+
Sbjct:   40 EVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWM 172          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = -1
Query:  289 EIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 708
            E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   44 EFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = -1
Query:  289 EIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 708
            E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   44 EFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = -1
Query:  289 EIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 708
            E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   44 EFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = -1
Query:  289 EIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 708
            E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   44 EFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 57/134 (42.54%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  298 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 693
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   48 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 57/134 (42.54%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  298 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 693
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   48 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 56/134 (41.79%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  298 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 693
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +++ + +++  L L S++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   48 VPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 55/134 (41.04%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  298 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 693
            +PTIGF+++  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L  ++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   48 VPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
The following BLAST results are available for this feature:
BLAST of CF835593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
ARL4C_HUMAN8.327e-3047.95ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL5C_MOUSE1.088e-2943.61ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL4A_RAT7.794e-2843.15ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE7.794e-2843.15ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN7.794e-2843.15ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN7.794e-2843.15ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL6_PONAB1.736e-2742.54ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN1.736e-2742.54ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL6_MOUSE2.268e-2741.79ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL6_BOVIN5.052e-2741.04ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835593 ID=CF835593; Name=CF835593; organism=Citrus sinensis; type=EST; length=708bp
GGGGGCGGGCCCCTTTTTTTACGCAATGCGAAAAAAACAATTTCAAATAT
GAGTGGTGCACCCCATTAGTTTCAATTACAGATATCTAAACCGAGCCAAA
AACCTTGGAGTACATGTATCCAACCAACAATTCTTCTATTACAATATAGT
TGTAAAGATCCTAGGACCAAAACAACACAACAACCCAAACGTCTCAAACA
AAAAGGGTTAAAAAGAAAAAAAAATAGATAATATTCACCCCTGCATCCAG
AATTGCCAGTCCGCAAAAAGATCTTAACAGCTTCAGGCCTTGTTAGCGAT
GTTGTTGGAGAGCCAATCCAGACCTTCATAAAGACCCTCACCAGAGGTTG
CACAGGTGCTCTGGATGTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCA
AGCTTATCAGTAATCTCAGCAGCATTCATTGCATTTGGAAGATCCTGTTT
GTTAGCAAATACAAGCAACACTGCATCTCGCAGCTCATCCTCATTCAACA
TCCTATGCAATTCATCCCTTGCTTCTACAATACGGTCTCTGTCATTGCTG
TCCACAACAAAAATGAGACCTTGAGTGTTCTGGAAATAATGCCTCCACAA
GGGACGAATCTTGTCCTGGCCACCAACATCCCACACAGTGAAACTGATGT
TTTTATATTCAACGGTCTCCACATTAAACCCAATGGTAGGAATTGTGGTG
ACAATCTC
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