CF835593

Overview
NameCF835593
Unique NameCF835593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = -1
Query:  298 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 705
            + T  PT+    E +    + FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +EL     L+  NK D P A++  E+   +GL+            +R    ++ S     G G  EG  W+S  I
Sbjct:   45 LATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQTTGKGKVPLKDIRPIEIFMCSVVMRQGYG--EGFRWISQYI 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL15_PONAB (ADP-ribosylation factor-like protein 15 OS=Pongo abelii GN=ARL15 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = -1
Query:  289 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 693
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q       + L +    L N +  K
Sbjct:   61 VSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEEK 197          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL15_HUMAN (ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = -1
Query:  289 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 693
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q       + L +    L N +  K
Sbjct:   61 VSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEEK 197          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL15_BOVIN (ADP-ribosylation factor-like protein 15 OS=Bos taurus GN=ARL15 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = -1
Query:  304 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 699
            + + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  E+     L  L R + W +Q       E L +    L N
Sbjct:   59 SVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEVKKYFELEPLARGKRWILQPCSLDDMEALKDSFSQLIN 192          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  298 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 690
            PT+    E +   N+ F  +D+GG  + R +WR YF +  G++F+VD+ D +R  EA+ EL  +L+ +EL     ++  NK D P+A++  E+  +LGL+            +R    ++ S     G G  +G+ WLSN +
Sbjct:   50 PTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQTTGKGRVQLEGIRPIELFMCSVVMRQGYG--DGIRWLSNYV 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: ARL15_MOUSE (ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = -1
Query:  289 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 693
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q       + L +    L N +  K
Sbjct:   61 VSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDVDTLKDSFSQLINLLEEK 197          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = -1
Query:  298 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 705
            + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     L+  NK D+P A+   E+   LGL++             R    Y+ S    SG G  EG  WLS  I
Sbjct:   45 LATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYNTTGKDTGKLPEGSRPIEVYMVSVVMRSGYG--EGFKWLSQYI 190          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = -1
Query:  298 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 690
            PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VD+ D +R+ E++ EL  +L  +EL++   ++  NK D P A++  ++   LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:   46 PTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 185          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = -1
Query:  298 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 690
            PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ EA+ E+  +L+ +EL     +V  NK D P A++  E+  +LG           L  +R    ++ S     G G  E + WLS  +
Sbjct:   50 PTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQTTGKGRVPLEGIRPIEVFMCSVVMRQGYG--EAIRWLSQYV 189          
BLAST of CF835593 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = -1
Query:  304 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 690
            PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EA+ EL  +L+ +EL     +V  NK D P+A++  E+  +LG           L  +R    ++ S     G G  +G+ WLS+
Sbjct:   50 PTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--DGIRWLSH 187          
The following BLAST results are available for this feature:
BLAST of CF835593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
SAR1_USTMA1.525e-1531.29Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
ARL15_PONAB1.991e-1534.31ADP-ribosylation factor-like protein 15 OS=Pongo a... [more]
ARL15_HUMAN1.991e-1534.31ADP-ribosylation factor-like protein 15 OS=Homo sa... [more]
ARL15_BOVIN1.991e-1534.33ADP-ribosylation factor-like protein 15 OS=Bos tau... [more]
SAR1_TRIRE3.397e-1530.99Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
ARL15_MOUSE3.397e-1534.31ADP-ribosylation factor-like protein 15 OS=Mus mus... [more]
SAR1_PICST4.436e-1531.76Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_PHANO9.883e-1530.99Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_NEUCR9.883e-1530.99Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_CHAGB9.883e-1532.14Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835593 ID=CF835593; Name=CF835593; organism=Citrus sinensis; type=EST; length=708bp
GGGGGCGGGCCCCTTTTTTTACGCAATGCGAAAAAAACAATTTCAAATAT
GAGTGGTGCACCCCATTAGTTTCAATTACAGATATCTAAACCGAGCCAAA
AACCTTGGAGTACATGTATCCAACCAACAATTCTTCTATTACAATATAGT
TGTAAAGATCCTAGGACCAAAACAACACAACAACCCAAACGTCTCAAACA
AAAAGGGTTAAAAAGAAAAAAAAATAGATAATATTCACCCCTGCATCCAG
AATTGCCAGTCCGCAAAAAGATCTTAACAGCTTCAGGCCTTGTTAGCGAT
GTTGTTGGAGAGCCAATCCAGACCTTCATAAAGACCCTCACCAGAGGTTG
CACAGGTGCTCTGGATGTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCA
AGCTTATCAGTAATCTCAGCAGCATTCATTGCATTTGGAAGATCCTGTTT
GTTAGCAAATACAAGCAACACTGCATCTCGCAGCTCATCCTCATTCAACA
TCCTATGCAATTCATCCCTTGCTTCTACAATACGGTCTCTGTCATTGCTG
TCCACAACAAAAATGAGACCTTGAGTGTTCTGGAAATAATGCCTCCACAA
GGGACGAATCTTGTCCTGGCCACCAACATCCCACACAGTGAAACTGATGT
TTTTATATTCAACGGTCTCCACATTAAACCCAATGGTAGGAATTGTGGTG
ACAATCTC
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