CF835594

Overview
NameCF835594
Unique NameCF835594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 9.793e-88
Identity = 160/167 (95.81%), Postives = 163/167 (97.60%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MGLT +KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.485e-83
Identity = 151/167 (90.42%), Postives = 157/167 (94.01%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLY
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 9.485e-83
Identity = 151/167 (90.42%), Postives = 157/167 (94.01%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLY
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.485e-83
Identity = 151/167 (90.42%), Postives = 157/167 (94.01%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLY
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 1.618e-82
Identity = 149/167 (89.22%), Postives = 159/167 (95.21%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MGL+ +KL + LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+RI EAR+EL RML+EDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLRQR WYIQ+ CATSG+GLY
Sbjct:    1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 1.618e-82
Identity = 148/167 (88.62%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MGL+ +KLF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+RI EA +EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLY
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 4.707e-82
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLY
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 4.707e-82
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLY
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 6.148e-82
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLY
Sbjct:    1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167
[Close]
BLAST of CF835594 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 6.148e-82
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 3 
Query:   75 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 575
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLY
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167
The following BLAST results are available for this feature:
BLAST of CF835594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_SOLTU9.793e-8895.81ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF2_RAT9.485e-8390.42ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE9.485e-8390.42ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN9.485e-8390.42ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF_CRYNE1.618e-8289.22ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_SCHPO1.618e-8288.62ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_LOCMI4.707e-8289.82ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME4.707e-8289.82ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_XENLA6.148e-8289.82ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT6.148e-8289.82ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835594 ID=CF835594; Name=CF835594; organism=Citrus sinensis; type=EST; length=576bp
TTCGTCCTCCACACCCTCCCCCCCTCCCCTCTCTCTCTCGCGTTCTCTGA
AGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAAGCTGTT
CAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTGGTCTTG
ATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGAGAGATT
GTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGAATATAA
AAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGATTCGTC
CCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTTGTTGTG
GACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATTGCATAG
GATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTATTTGCTA
ACAAACAGGATCTTCCAAATGCAATGAATGCTGCTGAGATTACTGATAAG
CTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAGAGCACCTG
TGCAACCTCTGGTGAGGGTCTTTATG
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