CF835595

Overview
NameCF835595
Unique NameCF835595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:61..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 63/163 (38.65%), Postives = 100/163 (61.35%), Query Frame = -2
Query:  177 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 662
            NPM E+++ K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:    2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = -2
Query:  180 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 662
            NP R + V K+V+++ VGE+GD+L  A +++ +++G TPV S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+                 ++  VT EDA  + + +Y
Sbjct:    2 NPNRSVAVDKVVVHMGVGEAGDKLVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = -2
Query:  159 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 659
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    S  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = -2
Query:  159 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 659
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = -2
Query:  180 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 659
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = -2
Query:  180 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 659
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 65/171 (38.01%), Postives = 99/171 (57.89%), Query Frame = -2
Query:  159 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 659
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  ++GIR+   I   VT+RG  A + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  +                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = -2
Query:  180 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 668
            +SNPMR   V+K+++++ VGESG  L  A ++L+ ++GQ  V   A+ T+ +F I++NE I C VT+RG +A + L +  ++ E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:    1 MSNPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = -2
Query:  180 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 668
            +SN MR   V+K+++++ VGESG  L  A ++L  ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G++GMD  VV++                   HRVT ED++ +    Y
Sbjct:    1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = -2
Query:  189 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 662
            NPM E+++ K  ++I VGE+G++L+RA  +LEQ+  QTPV + ++ T   FGIR+ + IAC +T+RG+KA + +E  L+     +    F   G   FGI+EHID+ G+KY+P  GI+GM+  V  E                  +HR++KE+ MK+ +
Sbjct:    2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160          
The following BLAST results are available for this feature:
BLAST of CF835595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL5_METTH1.708e-2738.6550S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METHJ4.970e-2738.2750S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_METM78.477e-2739.7750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM61.107e-2639.1850S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METVS3.221e-2640.8550S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METVA3.221e-2640.8550S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METM53.221e-2638.0150S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METMA5.495e-2637.2050S ribosomal protein L5P OS=Methanosarcina mazei ... [more]
RL5_METBF5.495e-2637.8050S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_METS31.224e-2537.7450S ribosomal protein L5P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835595 ID=CF835595; Name=CF835595; organism=Citrus sinensis; type=EST; length=705bp
AATACCTTTAAATACACAAATAACAAAACATCTTGAACTACCGAAAGCAT
CTAACTCAAGTTTGCAAAACGCCAAGTAATAACCAGTGTCTACAAACATC
AACACTATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATA
TTCTGGGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTT
CATTGCATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGC
ACCTACGGCGGCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAG
AAATCCATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATC
AATATGCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTTC
GACGCAGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGC
ATTGCCTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACG
TCTGATCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTG
TCTGTCCACTGAGTTGCTCCAGCACCTTAGCGGCTCTGGTGAGACGATCT
CCACTTTCACCAACGGAGATGTTGAGCACAAGCTTCTGAACCTTAATTTC
CCTCATGGGGTTCGAAAGTTTCTTCTCTGAAGCCATTCGGGTTTGCTGAT
GATGA
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