CF835595

Overview
NameCF835595
Unique NameCF835595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:61..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_NANEQ (50S ribosomal protein L5P OS=Nanoarchaeum equitans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 64/162 (39.51%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  189 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLL-ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 668
            + +PMR+I+++K+ LNI VGESG++L +A ++L++L+GQ PV +KA+  V  + IR    I   VT+RG+KA ++L E  L   ++++   +F+D G FGFGI E+I + G+KYDP  G+ G++ +V LE                G +HR+ KE+ +KW Q
Sbjct:    1 MEHPMRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYIMIPGMKYDPELGLIGLEAYVTLERPGYRVERRRIKRSKVGSRHRLNKEEIIKWAQ 161          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 61/176 (34.66%), Postives = 103/176 (58.52%), Query Frame = -2
Query:  165 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHR-VTKEDAMKWFQVKYEGVIL 686
            M +E +  NPMR+++++K+ +NI VGE+G+RL +A ++L++L+G  PV++ A+ T+R FG+R+   I   VT+RG KA + L   L    + +   +F + G   FGI EH+ + G +YDP  GI+GMD  + L                   +HR V+KE+AM++ +  +   I+
Sbjct:    1 MMAETQTVNPMRKLRLEKVTVNIGVGEAGERLQKAYQLLQELTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGFRVARRRRKKAHIPKRHRTVSKEEAMEFLKQNFNVTIV 176          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 59/172 (34.30%), Postives = 96/172 (55.81%), Query Frame = -2
Query:  165 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 677
            E K  N MR + + K+ +NI VGESG+RL +A +++++L+G  PV++K R ++R FG+R+   I    T+R   A++ L+  L    + L + +F + G   FGI EH+ + G +YDP  GI+GMD  + L                   +HRVTKE+A+ + +  +   IL
Sbjct:    5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKASIPRRHRVTKEEAINFMKENFNVTIL 176          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = -2
Query:  180 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 656
            MR++ + K+V+++ VGESG++L +A  +++ ++ QTP+ S A+ T  +F IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLE                  + RV KEDA+ + + +Y
Sbjct:    1 MRDVHIDKVVVHMGVGESGEKLVKAENIMKTITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = -2
Query:  168 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 662
            N M++  + K  +NI VGE G++LTRA K++E L  Q PV + ++ T   FGIR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  +                    RVTKE++M++ +  +   I
Sbjct:    2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEESMEYMKENFNVTI 167          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = -2
Query:  180 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 656
            MR   V+K+++++ VGESG  L  A  +L  ++GQ  V   A+ T+ +F I++NE I C VT+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:    1 MRTPIVEKVIVHMGVGESGQHLVNAEDILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 62/159 (38.99%), Postives = 97/159 (61.01%), Query Frame = -2
Query:  189 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 662
            +PM+ I ++K+V+NI VG SG++L +AA +L++L+G  P   +A+ +++ FGIR+ E I   VT+R D+A+  L   L+     + + +F D G   FGI+EHI L G+KYDP+ GI+GMD  V L                 G +  VTKE+A+++FQ
Sbjct:   13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRVQLRRRRRSKVGKRQLVTKEEAIEFFQ 171          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = -2
Query:  285 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE 662
            N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G  P  + A+ +VR F IR+   I   VT+R D A+  L   L VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +VL+
Sbjct:    2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLK 128          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 63/168 (37.50%), Postives = 92/168 (54.76%), Query Frame = -2
Query:  165 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQH-RVTKEDAMKWFQVKYEGVIL 662
            N MREI + K+V+NI VG +G+RL RAAKVLE L+   P F+ A+ TVR F IR+   I   VT+R D A+  L+     K+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V                    +  R++KE+ +K+ Q  +   I+
Sbjct:    7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRGGYRIEKRRIKKMHIPKKMRISKEETIKYLQENFNVKII 174          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = -2
Query:  180 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 656
            M++I + K+V+++ VGESG+RL +A  +++Q++GQ PV + A+ T  +FGIR+   I C VT+R + A + + + L + E  L    F  TG   FGI+EH D  G+ YDP+ GIYGMD  VVLE                    +V KE+A+ +    Y
Sbjct:    4 MKDIYIDKVVVHMGVGESGERLVKAEDLVKQITGQKPVRTIAKRTQPAFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163          
The following BLAST results are available for this feature:
BLAST of CF835595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL5_NANEQ2.088e-2539.5150S ribosomal protein L5P OS=Nanoarchaeum equitans... [more]
RL5_SULTO4.652e-2534.6650S ribosomal protein L5P OS=Sulfolobus tokodaii G... [more]
RL5_SULAC1.768e-2434.3050S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_METB62.309e-2435.6350S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METST3.015e-2437.3550S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METAC3.015e-2438.1350S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_PYRAE3.938e-2438.9950S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_THEVO5.143e-2446.4650S ribosomal protein L5P OS=Thermoplasma volcaniu... [more]
RL5_PICTO1.146e-2337.5050S ribosomal protein L5P OS=Picrophilus torridus ... [more]
RL5_METMJ1.146e-2337.5050S ribosomal protein L5P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835595 ID=CF835595; Name=CF835595; organism=Citrus sinensis; type=EST; length=705bp
AATACCTTTAAATACACAAATAACAAAACATCTTGAACTACCGAAAGCAT
CTAACTCAAGTTTGCAAAACGCCAAGTAATAACCAGTGTCTACAAACATC
AACACTATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATA
TTCTGGGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTT
CATTGCATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGC
ACCTACGGCGGCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAG
AAATCCATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATC
AATATGCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTTC
GACGCAGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGC
ATTGCCTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACG
TCTGATCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTG
TCTGTCCACTGAGTTGCTCCAGCACCTTAGCGGCTCTGGTGAGACGATCT
CCACTTTCACCAACGGAGATGTTGAGCACAAGCTTCTGAACCTTAATTTC
CCTCATGGGGTTCGAAAGTTTCTTCTCTGAAGCCATTCGGGTTTGCTGAT
GATGA
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