CF835595

Overview
NameCF835595
Unique NameCF835595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:61..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = -2
Query:  171 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 662
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L                 G  H +T ++A K + VK  GV
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = -2
Query:  291 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 662
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIV 126          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = -2
Query:  195 VQKLVLNISVGESGDRLTRAAKVLEQLS-GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKW 641
            V K+V+++ VGE+G+RL  A  ++  L+ G  P+ S AR T+ +FGIR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E                  +  V +E++MK+
Sbjct:    9 VAKVVVHMGVGEAGERLVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 60/164 (36.59%), Postives = 89/164 (54.27%), Query Frame = -2
Query:  180 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 659
            PM + +++K+ +N+ VGESGD+L  A KV+ +++GQ PV + A+ T  +F IR+   I   +T+RG KA + L+   +       +L   +F   G F FGI EHID    KYDPS GIYGMD  V  E                  +H V+KE+A+ + +  Y
Sbjct:   11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRANIPAKHLVSKEEAINYIETIY 174          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = -2
Query:  189 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 662
            +PMR I +  + +N+ +G+SG+RL +AAKV+ +L+G+TP +  A  +++ FGIRR E I   VT+R ++A+  L   L   ++ L   +F + G   FGI+EHI + G +YDP+ GI+G D  V L                 G  HRV++E+ +++FQ
Sbjct:   30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYRRRARADVGKDHRVSREETIRFFQ 187          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 64/167 (38.32%), Postives = 92/167 (55.09%), Query Frame = -2
Query:  171 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 668
            ++  MR+I ++K+VLN+ VG+SG+ +  A + L ++SG+ P    A  T R FG+R+ E I   VT+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIKYDP  GI G+D  + L                 G  HR+T  +A K F V+  GV
Sbjct:    1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = -2
Query:  177 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 656
            MRE  V+K+V+++ VG  G+ L +A ++LE++  Q PV + A+ T++ F +R  + I    T+RG+ A + LE+ L + + +  R+ F +TG F FG++EH +    +YDP  GIYG+D  V L                    HR+T EDA+ + +  ++
Sbjct:   13 MREPTVEKVVVHMGVGRGGEPLAQAEEILEEIVEQQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGYRVHKRDKVSRSIPSNHRLTAEDAVTFLESNFD 171          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_HALMA (50S ribosomal protein L5P OS=Haloarcula marismortui GN=rpl5p PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = -2
Query:  177 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 656
            MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I   VT+R + A + L++ L +   EL    F DTG F FG++EH +    +YDPS GIYG+D  V L                   +HR+   DA+ + +  Y+
Sbjct:   14 MREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLA--ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 172          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 50/171 (29.24%), Postives = 95/171 (55.56%), Query Frame = -2
Query:  177 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 686
            M+  +  S+ MRE  ++K+V+++ VG+ G+ L  A +++E+++ Q  V + ++ T+  FGIR+ + I   VT+RG+ A   L++ L++   ++ +  F DTG   FG+++H D    +YDP+ GIYG+D    +                   +HR+T EDA  + +  ++
Sbjct:    1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRVSKRDKATASIPSKHRMTAEDATAFLETNFD 169          
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = -2
Query:  177 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 656
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
The following BLAST results are available for this feature:
BLAST of CF835595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL5_NITMS1.496e-2339.3950S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_THEAC5.686e-2344.0050S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_METLZ7.427e-2341.1850S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_META31.654e-2236.5950S ribosomal protein L5P OS=Methanococcus aeolicu... [more]
RL5_CALMQ1.654e-2236.4850S ribosomal protein L5P OS=Caldivirga maquilinge... [more]
RL5_CENSY3.686e-2238.3250S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]
RL5_NATPD2.022e-2032.9250S ribosomal protein L5P OS=Natronomonas pharaoni... [more]
RL5_HALMA3.450e-2034.1650S ribosomal protein L5P OS=Haloarcula marismortu... [more]
RL5_HALLT4.506e-2029.2450S ribosomal protein L5P OS=Halorubrum lacusprofu... [more]
RL5_HALSA5.884e-2034.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835595 ID=CF835595; Name=CF835595; organism=Citrus sinensis; type=EST; length=705bp
AATACCTTTAAATACACAAATAACAAAACATCTTGAACTACCGAAAGCAT
CTAACTCAAGTTTGCAAAACGCCAAGTAATAACCAGTGTCTACAAACATC
AACACTATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATA
TTCTGGGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTT
CATTGCATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGC
ACCTACGGCGGCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAG
AAATCCATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATC
AATATGCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTTC
GACGCAGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGC
ATTGCCTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACG
TCTGATCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTG
TCTGTCCACTGAGTTGCTCCAGCACCTTAGCGGCTCTGGTGAGACGATCT
CCACTTTCACCAACGGAGATGTTGAGCACAAGCTTCTGAACCTTAATTTC
CCTCATGGGGTTCGAAAGTTTCTTCTCTGAAGCCATTCGGGTTTGCTGAT
GATGA
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