CF835606

Overview
NameCF835606
Unique NameCF835606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835606_ssr124 microsatellite CF835606_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835606_ssr104 microsatellite CF835606_ssr104:104..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1610 contig Csv1_Contig1610:424..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.249e-27
Identity = 63/138 (45.65%), Postives = 85/138 (61.59%), Query Frame = -2
Query:  221 PATLAEITLGQ-QQDF--YDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSR---VVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYL-LTFC 613
            PATLA+  L     DF  Y VSLVDG+NI +++ P  G G C   GC ++L   CPA LQ RS+     VV CKSAC AF S  +CC   + +PQ+CKP++YS+ FK ACP  ++YA+D P+ +  C+    L + FC
Sbjct:  114 PATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFC 251          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 63/134 (47.01%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 616
            PP TLAE  L Q    DFYD+SLVDG+NI M   P   S  C    C +D+N  CP  L+         C + C  F + +YCCT   G   SC  T YSR FK  CP AYSY  DDPTS  TCT +NY + FC
Sbjct:   99 PPNTLAEYALNQFNNLDFYDISLVDGFNIPMEFSPT--SSNCHRILCTADINGQCPNVLRAPGG-----CNNPCTVFQTNQYCCTNGQG---SCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTCTNTNYRVVFC 222          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.234e-26
Identity = 64/134 (47.76%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  221 PATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 613
            P TLAE  L Q    DF+D+SL+DG+N+ MS LP  GSG      C  D+N  CPA L+         C +AC  F    YCC GS  N   C PT YSR FK  CP AYSY  DD TS  TC  G+NY + FC
Sbjct:  100 PNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG-----VCNNACPVFKKDEYCCVGSAAN--DCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 226          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = -2
Query:  221 PATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 613
            PATLAE T   Q D+YDVSLVDG+NI ++I P   + +C+   C +D+N +CP+ L+V        C SAC  F + +YCC  ++ +  +C  T YS+IFK  CP+AYSYA DD  + A  +G++Y + FC
Sbjct:  104 PATLAEYTQSDQ-DYYDVSLVDGFNIPLAINPT--NAQCTAPACKADINAVCPSELKVDGG-----CNSACNVFKTDQYCCRNAYVD--NCPATNYSKIFKNQCPQAYSYAKDDTATFACASGTDYSIVFC 224          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.998e-25
Identity = 62/134 (46.27%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  221 PATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 613
            P TLAE  L Q    DF+D+S++DG+N+  S LP  GSG      C  D+N  CPA L+         C +AC  F    YCC GS  N  +C PT YSR FK  CP AYSY  DD TS  TC  G+NY + FC
Sbjct:   79 PNTLAEYALKQFNNLDFFDISILDGFNVPYSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG-----VCNNACPVFKKDEYCCVGSAAN--NCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.364e-24
Identity = 61/134 (45.52%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  221 PPATLAEITLGQ-QQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 616
            PP TLAE  L Q  QDF D+SLVDG+NI M   P  G   C    C + +N  CPA L+ +       C + C    +  +CCT     P SC PT  SR FKA CP AYSY  DDP S+ TC  G+NY + FC
Sbjct:  102 PPNTLAEFALNQPNQDFVDISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQGG-----CNNPCTVIKTNEFCCTNG---PGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.364e-24
Identity = 61/133 (45.86%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  221 PATLAEITLGQ-QQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 613
            P TLAE  L Q  QDF D+SLVDG+NI M   P  G   C    C + +N  CPA L+ +       C + C    +  YCCT     P SC PT  SR FK  CP AYSY  DDPTS+ TC +G+NY + FC
Sbjct:  103 PNTLAEFALNQPNQDFVDISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQGG-----CNNPCTVIKTNEYCCTNG---PGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.771e-24
Identity = 61/137 (44.53%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+NI M+  P + SG KC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  S+ FK  CP AYSY  DDPTS  TC G  +NY + FC
Sbjct:   99 PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALKVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 61/137 (44.53%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  221 PPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGSG-KCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+NI M+  P   SG KC    C +++N  CP  L+V        C + C  F   +YCCT        C PT +S+ FK  CP AYSY  DDPTS  TC G  +NY + FC
Sbjct:   99 PPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 61/137 (44.53%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT--GSNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+NI M+  P   SG KC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    +NY + FC
Sbjct:   91 PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 217          
The following BLAST results are available for this feature:
BLAST of CF835606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
OLP1_SOLLC2.249e-2745.65Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
OSL3_ARATH4.241e-2647.01Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
ZEAM_MAIZE7.234e-2647.76Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
PRR3_JUNAS3.590e-2544.27Pathogenesis-related protein OS=Juniperus ashei PE... [more]
IAAT_MAIZE7.998e-2546.27Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]
PRR2_TOBAC1.364e-2445.52Pathogenesis-related protein R minor form OS=Nicot... [more]
PRR1_TOBAC1.364e-2445.86Pathogenesis-related protein R major form OS=Nicot... [more]
NP24_SOLLC6.771e-2444.53Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
OSMO_TOBAC1.508e-2344.53Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
TPM1_SOLLC2.573e-2344.53Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835606 ID=CF835606; Name=CF835606; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTATACTTTATAATTTCCATTAACTAATAATAATGGCCAATTC
AACCTTATCATCTGATACCAACAAACTACCGTACCATGATATTATTACTA
GTAAACATAACATAACATATGATATAATAATAATAATCTTATCTATTACA
AATGAACTTGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTATAAAA
ATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGCCGGT
GCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCTCTGG
GACAAGCGGCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGATTGA
GGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAGCGAA
ACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGTAGCC
CCGCGGGACACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCTGCAT
TTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAACCGTC
GACCAGGCTCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATTTCGG
CGAGGGTGGCCGGCGGG
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