CF835606

Overview
NameCF835606
Unique NameCF835606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 61/137 (44.53%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT--GSNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+NI M+  P   SG KC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    +NY + FC
Sbjct:   99 PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 60/137 (43.80%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT--GSNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+NI M+  P + S GKC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  S+ FK  CP AYSY  DDPTS  TC    +NY + FC
Sbjct:   99 PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 60/137 (43.80%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 616
            PP TLAE  L Q    DF+D+S++DG+NI MS  P + G GKC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TCT   ++Y + FC
Sbjct:  100 PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 226          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23
Identity = 60/137 (43.80%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 616
            PP TLAE  L Q    DF+D+S++DG+NI MS  P   G GKC    CV+++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    ++Y + FC
Sbjct:  100 PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRVPGG-----CNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFC 226          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 57/135 (42.22%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  221 PPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT-GSNYLLTFC 616
            PP TLAE  L      DF+D+SLVDG+N+ M   P   +G      C +D+N  CP+ L+ +       C + C  F + +YCC     N  SC PT YSR FK  CP AYSY  DDP S  TC  G++Y + FC
Sbjct:   78 PPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPT-SNGCTRGISCTADINGQCPSELKTQGG-----CNNPCTVFKTDQYCC-----NSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFC 201          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 58/136 (42.65%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  221 PPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYA-GCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 616
            PP TLAE  L Q    DF+D+SLVDG+N+AM   P   SG C+    C +D+N  CP  L+         C + C  F + +YCC     N  +C  T +S+ FK  CP AYSY  DD TS  TC  G+NY + FC
Sbjct:  101 PPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPT--SGGCTRGIKCTADINGQCPNELRAPGG-----CNNPCTVFKTDQYCC-----NSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFC 224          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 57/135 (42.22%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  221 PPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI-RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 616
            PP TLAE +L Q  +D+ D+S + G+N+ M+  P  RG   C    C +D+   CPA L+         C  AC  F +  YCCT        C PT YSR FK  CP A+SY  D PT++ TC G SNY +TFC
Sbjct:   83 PPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRG---CRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFFKRLCPDAFSYVLDKPTTV-TCPGSSNYRVTFC 204          
BLAST of CF835606 vs. ExPASy Swiss-Prot
Match: THM2_THADA (Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 57/135 (42.22%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  221 PPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI-RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 616
            PP TLAE +L Q  +D+ D+S + G+N+ M   P  RG   C    C +D+   CPA L+         C  AC  F +  YCCT        C PT YSR FK  CP A+SY  D PT++ TC G SNY +TFC
Sbjct:  105 PPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRG---CRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFFKRLCPDAFSYVLDKPTTV-TCPGSSNYRVTFC 226          
The following BLAST results are available for this feature:
BLAST of CF835606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
OS13_SOLCO2.573e-2344.53Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
OS81_SOLCO3.360e-2343.80Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
OLPA_TOBAC3.360e-2343.80Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
OS35_SOLCO5.732e-2343.80Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
P21_SOYBN4.852e-2242.22Protein P21 OS=Glycine max PE=1 SV=1[more]
TLP_ACTDE5.365e-2142.65Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
THM1_THADA1.561e-2042.22Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]
THM2_THADA2.039e-2042.22Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835606 ID=CF835606; Name=CF835606; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTATACTTTATAATTTCCATTAACTAATAATAATGGCCAATTC
AACCTTATCATCTGATACCAACAAACTACCGTACCATGATATTATTACTA
GTAAACATAACATAACATATGATATAATAATAATAATCTTATCTATTACA
AATGAACTTGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTATAAAA
ATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGCCGGT
GCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCTCTGG
GACAAGCGGCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGATTGA
GGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAGCGAA
ACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGTAGCC
CCGCGGGACACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCTGCAT
TTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAACCGTC
GACCAGGCTCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATTTCGG
CGAGGGTGGCCGGCGGG
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