CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.379e-46
Identity = 96/203 (47.29%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMR-----GGAG-DQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            PF+ KTY MV+D  TD+ +SW   +NSF+V DP  F+  +LP +FK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQ+HLLKNI RRK  S+ +++   +      G  G D ++D    D++++M E+ +LRQEQ++    L+ M  RL+ TE+R +QMMAFL +V+++P+ L +++ + E      +     ++RR+
Sbjct:   52 PFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAISKKRRRRI 254          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.470e-46
Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA--GDQDL--DDEEI---VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEK--ESTTNRNNYYLGDKKRRL 700
            +APFV KT+ MV+DP+T++++ WG A N+F+V+DP  FS  +LP+YFK  NF+SFVRQLNTYGFRKVDPD+WEFA+E FLRGQ  LL  IVR+K            +GGA  G ++L  + EE+   +  + RLR+EQ+ ++EELQ M++RL A E RP QMMAFL K+ ++P ++ R ++ K  E     NN     K+RR+
Sbjct:   22 VAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK-----------KKGGAAPGCRELCEEGEEVRGTIEAVQRLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPGVVLRAMLAKKEELAAAGNNGSDPCKRRRI 213          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.174e-45
Identity = 95/215 (44.19%), Postives = 139/215 (64.65%), Query Frame = 2
Query:  113 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--HSSNRSAHHMMMRGGAG----------DQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMI 706
            N + PF+ KTY MV+DP T+ ++SW   NNSF+V    +FS+ +LP YFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRG+K LLK+IVRRK  H         +     G          +++++    D+ ++M E+ RLRQ+Q++ + +LQ + ++++  E+R +QMM+FL K V+ P  L +++ +  +  NR      +KKRRL +
Sbjct:   23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNR-QIPGSNKKRRLPV 236          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.259e-45
Identity = 93/196 (47.45%), Postives = 130/196 (66.33%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDD---------------------EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 649
            PF+ KTY +V D  T+ ++SW K+NNSFIV DP  FS  +LP +FK NNFSSFVRQLNTYGFRKV+PD+WEFANE FLRGQKHLLKNI RRK S+N  ++ M     +  Q LD+                     + ++ME+ RLRQ+Q+S    L  + ++L+ TE + +QMM+FL + +++PD + +++ +KE
Sbjct:   61 PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNN--SNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKE 254          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 93/203 (45.81%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSN------RSAHHMMMRGGAGDQD------LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRR 697
            PF+ KTY +V DP TD ++SW +A NSF+V DP  F+  +LP  FK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQ+HLLK I RRK  SN      +S    +  G  G ++       D   ++ E+ +LRQEQ++  + ++ M  RL A E++  QMM FL + + +P+   ++  +KE      +     KKRR
Sbjct:   42 PFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAI--SKKRR 242          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 94/214 (43.93%), Postives = 135/214 (63.08%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA-------GDQDLDDE---------EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGD--KKRRLMI 706
            I PF+ KTY MV+DP TD ++SW   NNSF+V +  +F+++ LP YFK NNFSSFVRQLNTYGFRKVDPD+WEFANE FLRGQK +LK+IVRRK +  +      ++  +       G   L++E          ++ E+ RLRQ+Q+  +  LQ + +++   E+R +QMM+FL K V+ P  L +   +    +N  N ++ +  KKRRL +
Sbjct:   21 IPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQ----SNEANQHISESNKKRRLPV 230          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.470e-43
Identity = 91/188 (48.40%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH---------SSNRSAHHMMMRGGAGDQD---LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRI-IMEKE 649
            PF+ KTY+MV DP TD+++SW    NSF+V D   FS  +LP YFK +NFSSF+RQLNTYGFRK+DPD+WEFANE FL GQKHLLKNI RR++          S  S   +   G  G+ +    D   +V E+ RLRQ+Q S   ++  M +RL  TE+R +QMM FL K + +P+ + +  +M KE
Sbjct:   44 PFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKE 231          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.547e-42
Identity = 91/203 (44.83%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH---SSNRSAHHMMMRGG--AGDQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLM 703
            PF+ KTY+MV D +TD +ISW    NSFIV D   FS  +LP +FK +NFSSF+RQLNTYGFRKVDPD+WEFANE FL GQKHLLK I RR++   S N+      +  G    +++L+    D+ ++M EI +LRQ+Q+S   ++  M +++E  ER+  QMM+FL K+  +P  L + + ++    ++    +G K+R  M
Sbjct:   31 PFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRLTM 233          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41
Identity = 86/186 (46.24%), Postives = 124/186 (66.67%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDE---------EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 649
            + PF+ KTY +V +P  D +ISWG A NSF+V DP  F++ +LP +FK NNFSSFVRQLNTYGFRKV  D+WEFA+E FLR  KHLLK IVRR+ S  + +   +  G +G+  LD E          ++ E+ RL+QE     E++  +N+RLE+ E R +QM++FL K++++P  L ++ M ++
Sbjct:   65 LPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSG--LQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQLKMHRQ 248          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41
Identity = 93/216 (43.06%), Postives = 128/216 (59.26%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK---------HSSNRSAHHMMMRGGA-------------GDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGD---KKRR 697
            PF+ KTY++V+DP TD++ISWG A NSF+V D   F+  +LP YFK +NFSSFVRQLNTYGFRKVDPD+WEFANE FLRG+K LLK I RR+          SS+ S+ H      A                  D   ++ E+ +LRQEQ++   ++Q M +R+ A E++ +QM  FL + +++P  L  ++  +       N  L D   KKRR
Sbjct:   53 PFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISAAEQKQQQMTVFLARAMKNPGFLQMLVDRQAGQHGARNRVLEDALSKKRR 268          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFA2B_ORYSJ4.379e-4647.29Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFC1B_ORYSJ7.470e-4649.26Heat stress transcription factor C-1b OS=Oryza sat... [more]
HFA1B_ARATH2.174e-4544.19Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA6B_ARATH8.259e-4547.45Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2C_ORYSJ1.193e-4345.81Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA1E_ARATH1.193e-4343.93Heat stress transcription factor A-1e OS=Arabidops... [more]
HSFA2_ARATH3.470e-4348.40Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HSF30_SOLPE8.547e-4244.83Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HSFA3_ORYSJ1.116e-4146.24Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFA2A_ORYSJ1.116e-4143.06Heat stress transcription factor A-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
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