CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.458e-41
Identity = 91/204 (44.61%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWG-KANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH---SSNRSAHHMMMRGGAGDQDL-----DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLM 703
            +APF++KT++MV DP TD+++SWG  A NSF+V DP  F+  +LP +FK  NFSSF+RQLNTYGFRKV  D+WEFANE FL GQ+HLL NI RR+    + + +   +   GG G+ ++     D E +  E+ARLR++Q+    +L  M +R+  TERR EQ   FL + +  PD+L  I     +   R       KKRR++
Sbjct:   41 VAPFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGAGTGSTTPRAVNCGGGGGEGEVERLRRDKEALARELARLRRQQQEARAQLLDMERRVRGTERRQEQCTEFLARALRSPDVLDNIARRHAAAVER-------KKRRML 237          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.234e-40
Identity = 86/201 (42.79%), Postives = 134/201 (66.67%), Query Frame = 2
Query:  101 NNTNNVIAPFVMKTYQMVNDPTTDSLISWG-KANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKH--SSNRSAHHMMMRGGAGDQ-------DL---DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNR 664
            +++++ +APF+ K Y MV+D TTDS+ISW   A+NSF+++D   FS ++LP YFK +NFSSF+RQLN YGFRKVD D+WEFAN+ F+RGQK LLKN++RRK+  SS +S H       A ++       D+   D + +  E+ ++RQ Q+  D ++  +  R++  E   ++M++FL  V+++P LL +++  KE  T R
Sbjct:   11 SSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWR 211          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.234e-40
Identity = 86/205 (41.95%), Postives = 133/205 (64.88%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK-----HSSNRSAHHMMMRGGAG-DQDLD----DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMI 706
            PF+ KT+ +V DP TD ++SWG+A +SF+V DP  F+   LP +FK NNFSSFVRQLNTYGFRK+DPD+WEFAN+ FLRGQ+HLLK I RR+       S ++    +  G  G D+++D    D+ I++ E+ +LR +Q+S    ++ M +RL+  E++  QMM FL + +++PD   ++I +++      + +   + R + I
Sbjct:   37 PFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTRSIDI 241          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 2
Query:  113 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK---------HSSNRSAHHMMMRGGAGDQDLDDEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRI 634
            N I PF+ KT+ +V+DPT D +ISWG    SF+V DPL+F++ ILP  FK NNFSSFVRQLNTYGFRK+D DKWEFANE FLRG+KHLLKNI RR+          S+++S       GG  ++   +   +M E+  L+Q+ +     +  +N+RL+A E+R +Q+++FL K+ ++   L R+
Sbjct:   51 NPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERL 234          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 83/183 (45.36%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSN-RSAHHMMMRGGAGDQDLDDEE-------IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEK 646
            +PF+ KT++MV DP T+ ++SW +   SF+V DP  FS  ILP YFK NNFSSFVRQLNTYGFRK++ ++WEF NE FL GQ+ LLK+I RR  SS+  S ++   +  A D  ++  +       ++MEI+ LRQE++     +Q M +R+   E++   MM+FL + VE+P LL +I  +K
Sbjct:   27 SPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVENPSLLQQIFEQK 209          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.845e-39
Identity = 83/202 (41.09%), Postives = 136/202 (67.33%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANN-SFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK----HSSNRSAHHMMMRGGAGDQ----DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            APF++KTY+MV+DP+TD+++SW  A++ SF+V +  +F+ R+LPAYFK +NFSSF+RQLNTYGFRK+DP++WEFANE+F++GQKHLLKNI RRK    HS    A     R    D+      +   +  ++ + +Q+Q     +++ + +R+   E+R  +M+AFL +  ++P  + +++   E+++   + +  +KKRRL
Sbjct:   20 APFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHSHPPGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQFVNKLVKMAEASSIFTDAF--NKKRRL 219          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.845e-39
Identity = 76/179 (42.46%), Postives = 118/179 (65.92%), Query Frame = 2
Query:  113 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 649
            N   PF+ KT++MV+DP TD ++SW +   SF+V D   FS  +LP +FK +NFSSF+RQLNTYGFRK++ ++WEFANE FL GQ+ LLKNI RR   +  S+          +   + + ++MEI  LRQ+Q++    ++ M +R+E TER+  QMM+FL + ++ P  L +++ +++
Sbjct:   25 NAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSS---PSHDACNELRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFLHQLLKQRD 200          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.733e-38
Identity = 89/220 (40.45%), Postives = 130/220 (59.09%), Query Frame = 2
Query:   92 MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGD-QDLDDEEIVMEIARLRQEQKSLDEELQ-------GMNKRLEATERR-------PEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMI 706
            ME       + PF+ KTY+MV+DP+TD+++ W  A  SF+V +  +F + +LP YFK NNFSSFVRQLNTYGFRKVDP++WEFANE F++GQ+H LKNI RRK   + S+H      GAG   D + ++   EI RL+ +  +L  ELQ        M KR++A E +          +++++ ++V+ P  L   + +++            KKRRL I
Sbjct:    1 MEGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQ----GAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHR---------KKRRLPI 207          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.668e-37
Identity = 79/166 (47.59%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  128 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            F+ KTY +V D +T++++SW + NNSFIV +P  F+   LP  FK NNFSSFVRQLNTYGF+K+D ++WEFANE FL+G++HLLKNI RRK SS        + G   +   D   + +E+ RLR++Q+S+   L  M ++L+ TE + E MM FL K ++ P  L
Sbjct:   20 FLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQT--QSLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFL 183          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.845e-37
Identity = 86/197 (43.65%), Postives = 129/197 (65.48%), Query Frame = 2
Query:   92 MEPNN---TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVM---EIARLRQEQKSLDEEL--------------QGMNKRLEATERRPEQMMAFLYKVVEDPDL 622
            M+ NN   +++ + PF+ KTY+MV+D ++DS++SW ++N SFIV +P +FS+ +LP +FK NNFSSF+RQLNTYGFRK DP++WEFAN+ F+RGQ HL+KNI RRK   + S  ++     A    L D E V    +I RL +E++ L EEL              + + +RL+  E+R + M++F+ +V+E P L
Sbjct:    1 MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQ----AQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEKPGL 193          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFA6A_ORYSJ1.458e-4144.61Putative heat stress transcription factor A-6a OS=... [more]
HSFA8_ARATH1.234e-4042.79Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFA2D_ORYSJ1.234e-4041.95Heat stress transcription factor A-2d OS=Oryza sat... [more]
HSFA3_ARATH1.365e-3946.74Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA7B_ARATH3.970e-3945.36Heat stress transcription factor A-7b OS=Arabidops... [more]
HSFA5_ORYSJ8.845e-3941.09Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA7A_ARATH8.845e-3942.46Heat stress transcription factor A-7a OS=Arabidops... [more]
HFA4B_ORYSJ5.733e-3840.45Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA6A_ARATH1.668e-3747.59Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA4A_ARATH2.845e-3743.65Heat stress transcription factor A-4a OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
back to top