CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.278e-37
Identity = 86/215 (40.00%), Postives = 134/215 (62.33%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMM---MRGGAGDQDLD----------------DEEIVM-EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYL--GDKKRR 697
            +APF+ K Y MV+DP TD++ISW +   SF++ D   F +R L  +FK +NF+SF+RQLNTYGFRKV PD+WE+ANE F+ GQKHLLK I RRK SS  S   +    ++   G ++++                D+ ++M ++  LR  Q++ + E+Q + +RL+  E+  +QMMA L  VV++P  L +++ +++    R+N++   G KKRR
Sbjct:   48 VAPFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAF-ERDLHRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLRHYQQTSNLEVQNLIERLQVMEQNQQQMMALLAIVVQNPSFLNQLVQQQQQ-QRRSNWWSPDGSKKRR 260          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.278e-37
Identity = 78/173 (45.09%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEE-----------IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 610
            PF++KTY+MV D  T+ ++SWG    SF+V +PLDFS+ +LP YFK NNFSSF+RQLNTYGFRK+DP++WEFANE F+RG  HLLKNI RRK   + S  + +    A  +  + EE           +V ++ R  Q+Q  ++ ++Q M  RL A E+R + ++A L ++++
Sbjct:   20 PFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQ 192          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.478e-35
Identity = 84/207 (40.58%), Postives = 120/207 (57.97%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANN--SFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA--GDQDLDDEEIVM---------EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLM 703
            APFV KTY+MV D  TD+++SWG   +  SF+V DP   +  +LP +FK  NFSSFVRQLNTYGFRKV PD+WEFANE FL GQKHLLKNI RR+ S       +  +     G  +   E + +         E+  L+Q+  +   +L  M + +   ERR +Q + F  KV+ +P  + ++++   +  N+N      K++RLM
Sbjct:   92 APFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRRVSKPLVDSQLRNKASVVFGQPEAPGEVVSLKRDRAALRAEVIMLKQQYNACKSQLIAMEEMVRNIERRQQQTIGFFAKVLTNPAFVQQVLL---NYVNKNGLRGAAKRQRLM 295          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.322e-34
Identity = 77/201 (38.31%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--HS------SNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 700
            APF++KTY+MV+D +TD ++SW   NNSFIV +  +FS+ +LP YFK NNFSSF+RQLNTYGFRK+DP++WEF N+ F++ QKHLLKNI RRK  HS      S+      +++        +   I  ++ + +Q++     + + M + ++  E R ++++ FL   + +P  +     + E      +    +KKRRL
Sbjct:   22 APFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQL----DISAYNKKRRL 218          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.944e-34
Identity = 71/188 (37.77%), Postives = 119/188 (63.30%), Query Frame = 2
Query:   95 EPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDL------------DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDL 622
            E N  ++ + PF+ KTY+MV+D ++DS+++W + N SFIV +P +FS+ +LP +FK  NFSSF+RQLNTYGFRKVDP+KWEF N+ F+RG+ +L+KNI RRK   + S  ++  +    + +             + E ++ E+    QE+K  + ++  +  RL+  E+  + ++A++ +V+  P L
Sbjct:    3 ENNGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNPLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQVLGKPGL 190          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.846e-34
Identity = 67/186 (36.02%), Postives = 113/186 (60.75%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS---NRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNR 664
            +I PF+ KT+++V+D  TD ++SW     SFI+ D  +FS+ +LP YFK  NFSSF+RQLN+YGF+KVD D+WEFANE F  G+KHLLKNI RR  ++   N+ A              +   + +E+ +L+Q+Q+    ++  + +++   +   + M++F  K+ +D   + R++ +++    R
Sbjct:   68 LITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAKDQRFVERLVKKRKMKIQR 253          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.786e-31
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--------HSSNRSAHH 427
            V APF+ KTYQ+V+DP TD ++SWG  + +F+V  P +F++ +LP YFK NNFSSFVRQLNTYGFRK+ PD+WEFANE+F RG+KHLL  I RRK        HS   S HH
Sbjct:   31 VPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHH 142          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.786e-31
Identity = 78/197 (39.59%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGA-------GDQ---------------DLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE-DPDLLPRIIME 643
            APF++KTYQ+V+D  TD +ISW +   +F+V    +F++ +LP YFK NNFSSFVRQLNTYGFRK+ PDKWEFANE F RGQK LL  I RRK  ++  A    +  GA       GD                 +D    + +   L  E + L ++ Q ++  L   +++  +++AFL + V+  PD++ RI+ +
Sbjct:    8 APFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTSTPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIMSQ 204          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS 409
            APF+ KTYQ+V+DP+TD ++SWG+   +F+V  P +F++ +LP YFK NNFSSFVRQLNTYGFRK+  D+WEFANE+F +G KHLL  I RRK SS
Sbjct:   35 APFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSS 130          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.746e-30
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHS 406
            V APF+ KTYQ+V+DP TD ++SWG+ + +F+V  P +F++ +LP YFK NNFSSFVRQLNTYGFRK+  D+WEFANE+F +G KHLL  I RRK S
Sbjct:   31 VPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSS 127          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFA9_ORYSJ8.278e-3740.00Heat stress transcription factor A-9 OS=Oryza sati... [more]
HFA4D_ORYSJ8.278e-3745.09Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA6B_ORYSJ3.478e-3540.58Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSFA5_ARATH1.322e-3438.31Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HFA4C_ARATH2.944e-3437.77Heat stress transcription factor A-4c OS=Arabidops... [more]
HSFA9_ARATH3.846e-3436.02Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HSFB4_ARATH1.786e-3158.93Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HSF24_SOLPE1.786e-3139.59Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB4D_ORYSJ2.579e-3062.50Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ5.746e-3061.86Heat stress transcription factor B-4b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
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