CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISWGKAN-NSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSA 421
            V APF+ KTYQ+V+DP TD ++SWG    ++F+V  P +F++ ILP YFK NNFSSFVRQLNTYGFRKV P++WEFANE+F +G+K LL  I RRK SS  +A
Sbjct:   21 VPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSASTA 123          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.353e-29
Identity = 69/179 (38.55%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  113 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRG-------GAGD-----------QDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 595
            +V APF+ KTYQ+V+D +TD ++SW +   +F+V    +F++ +LP YFK NNFSSF+RQLNTYGFRK  PDKWEFAN++F RG + LL +I RRK     +A   ++ G       G GD              +   +   +A L  E + L  E   ++  L A +++ ++++ FL
Sbjct:   10 SVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDELVTFL 188          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.084e-28
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  101 NNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHS 406
            ++  ++  PF+ KTYQ+V DP  D LISW +   +FIV  P +F++ +LP YFK NNFSSFVRQLNTYGFRKV PD+WEF+N+ F RG+K LL++I RRK S
Sbjct:   51 DSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKIS 152          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK 400
            PF+ KTYQ+V DP  D +ISW +  ++F+V  P +F++ +LP YFK NNFSSFVRQLNTYGFRK+ PD+WEFAN+ F RG+K LL +I RRK
Sbjct:   38 PFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRK 129          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.024e-28
Identity = 55/102 (53.92%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   95 EPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK 400
            E ++  ++  PF+ KT+ +V D + D +ISW +  +SFIV +P DF++ +LP +FK NNFSSFVRQLNTYGF+KV PD+WEF+N++F RG+K LL+ I RRK
Sbjct:   13 ESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRK 114          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.174e-28
Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISW-----GKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSS 409
            V APF+ KTYQ+V+DP TD ++SW     G++ +SF+V  P +F++ ILP YFK +NFSSFVRQLNTYGFRKV P++WEFANE+F +G+K LL  I RRK ++
Sbjct:   22 VPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSAA 124          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.198e-27
Identity = 71/195 (36.41%), Postives = 106/195 (54.36%), Query Frame = 2
Query:  122 APFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAH-------------------HMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 649
            APF+ KT QMV +  TD +ISWGK   SF+V  P++F++ +LP +FK  NFSSFVRQLNTYGFRKV PD+WEFAN  F RG++ LL  I RRK ++ +S+                           +G+            A +  E + L ++ Q +   L    R  E+++ FL + ++   L  R++M+++
Sbjct:   29 APFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDRSSSSASSPPRADITSENEQLRKDNQTLTMELARARRHCEELLGFLSRFLDVRQLDLRLLMQED 223          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.198e-27
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  116 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK 400
            V  PF+ KTYQ+V+DP  D +ISW    ++F+V  P +F++ +LP YFK NNFSSFVRQLNTYGFRK+ PD+WEFAN+ F RG++ LL  I RRK
Sbjct:   45 VPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSA 421
            PF+ KTY MV DP+TD  ISW  +  +F+V  P +F++ +LP +FK +NFSSFVRQLNTYGF+KV  D+WEFAN+ F RG+KHLL  I RRK S    A
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGA 108          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  125 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRK--HSSNRSAHHMMM 436
            PF++KTY++V DPTTD +ISW +    F+V  P +F++ +LP  FK  NFSSFVRQLNTYGFRKV   +WEF+NE F +GQ+ L+ NI RRK  H S+  ++H ++
Sbjct:   40 PFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVV 145          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFB4C_ORYSJ2.852e-2961.17Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB1_ARATH6.353e-2938.55Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2B_ARATH1.084e-2857.84Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2C_ORYSJ4.118e-2860.87Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH7.024e-2853.92Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB4A_ORYSJ9.174e-2858.25Putative heat stress transcription factor B-4a OS=... [more]
HSFB1_ORYSJ1.198e-2736.41Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFB2B_ORYSJ1.198e-2758.95Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2A_ORYSJ2.044e-2757.58Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSFB3_ARATH5.947e-2752.83Heat stress transcription factor B-3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
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