CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835628_ssr719 microsatellite CF835628_ssr719:719..733. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835628_ssr742 microsatellite CF835628_ssr742:742..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   89 GMEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHS-SNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATER 568
            G  P  +N  ++ F+ K + +V DP TD LI W  + NSF V D   F++ +LP YFK NN +SFVRQLN YGFRKV           + D  EF + +F+RGQ+HLL+NI R+  S S+     + +R     QD +  +++ +I  ++ +Q+S+D +L  M    EA  R
Sbjct:   12 GAGPGGSN--VSAFLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRKVTSVSSIKNEDIKVR-----QD-NVTKLLTDIQVMKGKQESMDSKLIAMKHENEALWR 175          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 72/217 (33.18%), Postives = 116/217 (53.46%), Query Frame = 2
Query:   92 MEPNNT---NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKH--SSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKR 694
            M+P+ T   +NV A F+ K + +V DP TD LI W    NSF V D   F++ +LP YFK NN +SFVRQLN YGFRKV           + D  EF + +F+RGQ+ LL+NI R+ +  S+ +S    + +   G       +++ ++  ++ +Q+S+D  L  M    EA  R   ++ +   K  +   ++ ++I    S   ++N  LG K++
Sbjct:    1 MDPHGTCGGSNVPA-FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRKVNTMSATKSDEVKVRQDSVG-------KLISDVQSMKGKQESIDGRLLSMKHENEALWR---EVASLRQKHTQQQKVVNKLIQFLVSLV-QSNRILGVKRK 205          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 61/173 (35.26%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  104 NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 589
            +T      FV K + MVND + +  I W  +  S +V +   F Q +LP YFK +NF+SFVRQLN YG+ KV           +  +WEF NE F RG+++LL+NIVR+K ++N       + GG  + ++D   ++ E+  ++  Q ++ E+L+ + K  E   +  E MMA
Sbjct:  189 STTRARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQKSNTN-------ILGGTTNAEVDIHILLNELETVKYNQLAIAEDLKRITKDNEMLWK--ENMMA 352          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHS-SNRSAHHMMMRGGAGDQDLDDEEIV--------MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            +  F+ K + +V+DP TD+LI W  + NSF V D   F++ +LP YFK NN +SFVRQLN YGFRKV           + D  EF +  FLRGQ+ LL+NI R+  S S   +  + +R  +  + L D +++         ++  ++ E ++L  E+  + ++    ++   +++ FL  +V+   +L
Sbjct:   15 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRIL 203          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHS-SNRSAHHMMMRGGAGDQDLDDEEIV--------MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            +  F+ K + +V+DP TD+LI W  + NSF V D   F++ +LP YFK NN +SFVRQLN YGFRKV           + D  EF +  FLRGQ+ LL+NI R+  S S   +  + +R  +  + L D +++         ++  ++ E ++L  E+  + ++    ++   +++ FL  +V+   +L
Sbjct:   15 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRIL 203          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.853e-20
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHS-SNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATER 568
            +  F+ K + +V+DP TD+LI W  + NSF V+D   F++ +LP YFK +N +SFVRQLN YGFRKV           + D  EF +  FLRGQ+ LL+NI R+  S S   +  + +R  +  + L D ++      ++ +Q+S+D +L  M    EA  R
Sbjct:   15 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLRSEDIKIRQDSVTKLLTDVQL------MKGKQESMDSKLLAMKHENEALWR 170          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.160e-20
Identity = 63/156 (40.38%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  101 NNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDK-WEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEEL 532
            ++ N  I  F  K Y MVND +TDSLI W    +SF+V+   DF++ +LP YFK NNFSSFVRQLN YGF KV            P++  EFAN  F R Q  LL  + R+K  S              +  LD   I  E+  +R +Q +L  EL
Sbjct:   44 SSQNRKITQFSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAGSQPVEE--------SNTSLDMSTISSELQNIRIQQMNLSNEL 191          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  128 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSN 412
            FV K + M+ND +   LI W +   SFIV +  +F  +ILP YFK +NF+SFVRQLN YG+ KV             DKW+F NE F+RG++ LL+ I+R+K SSN
Sbjct:  175 FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSN 280          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 64/201 (31.84%), Postives = 106/201 (52.74%), Query Frame = 2
Query:  128 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRR 697
            F+ K + +V DP +D +I W +   +F ++D   F++ +LP YFK NN SSF+RQLN YGFRKV                EF + +F +G  HLL+NI +RK S+ R+    +       +DL   +++ E+  +R++Q ++D  L  M +  +A  +   ++     K  +   LL +I+    S   R NY +G K++R
Sbjct:   19 FLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENI-KRKVSAVRTEDLKVCA-----EDL--HKVLSEVQEMREQQNNMDIRLANMKRENKALWK---EVAVLRQKHSQQQKLLSKILQFILSLM-RGNYIVGVKRKR 207          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 55/186 (29.57%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMR------GGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            +  F+ K + +V +  T+  I+W +   SF+V+D   F++ ILP YFK NN +SFVRQLN YGFRKV                EF + +F +GQ  LL+NI R+  SS    + +           A    +  E I   ++ L+ E +SL +E+  +  +    ++   +++ F+  +V++  L+
Sbjct:    7 VPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLV 192          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF1_CHICK4.410e-2238.37Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF_XENLA1.283e-2133.18Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF_KLULA1.283e-2135.26Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF1_MOUSE8.317e-2132.28Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN8.317e-2132.28Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF1_BOVIN1.853e-2037.65Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF_SCHPO3.160e-2040.38Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF_YEAST5.391e-2047.17Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF3_CHICK2.049e-1931.84Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF2_MOUSE1.917e-1729.57Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
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