CF835628

Overview
NameCF835628
Unique NameCF835628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 55/186 (29.57%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMR------GGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            +  F+ K + +V +  T+  I+W +   SF+V+D   F++ ILP YFK NN +SFVRQLN YGFRKV                EF + +F +GQ  LL+NI R+  SS    + +           A    +  E I   ++ L+ E +SL +E+  +  +    ++   +++ F+  +V++  L+
Sbjct:    7 VPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLV 192          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDD-EEIVMEIARLRQEQKSLDEELQGMNKRLE 556
            +  F+ K + +V DP TD LI W  +  SF+V D   F++ +LP YFK +N +SFVRQLN YGFRKV           + D  EF +  F+RG++ LL+  VRRK  +        +RG       +D   ++ E+  LR  Q+S +  LQ + ++ E
Sbjct:   17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLER-VRRKVPA--------LRGDDSRWRPEDLSRLLGEVQALRGVQESTEARLQELRQQNE 165          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDD-EEIVMEIARLRQEQKSLDEELQGMNKRLE 556
            +  F+ K + +V DP TD LI W  +  SF+V D   F++ +LP YFK +N +SFVRQLN YGFRKV           + D  EF +  F+RG++ LL+  VRRK  +        +RG  G    +D   ++ E+  LR  Q+S +  L+ + ++ E
Sbjct:   18 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLER-VRRKVPA--------LRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNE 166          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 55/187 (29.41%), Postives = 101/187 (54.01%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMR-------GGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 625
            +  F+ K + +V +  ++ LI+W +   SF+V+D   F++ ILP YFK NN +SFVRQLN YGFRKV                EF + +F +G++ LL++I +RK SS+R   + + +         A   ++  E I   ++ L++E +SL  E+  +  +    ++   +++ F+  +V++  L+
Sbjct:   21 VPAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHI-KRKVSSSRPEENKISQEDLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAKHLKQQQVIRKIVQFIVTLVQNNQLV 206          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV-----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLE 556
            +  F+ K + +V DP TD LI W  +  SF+V D   F++ +LP YFK +N +SFVRQLN YGFRKV           + D  EF +  F+RG++ LL+  VRRK  + RS       G    +DL    ++ E+  LR  Q+  +  L+ + ++ E
Sbjct:   17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLER-VRRKVPALRSDD-----GRWRPEDLG--RLLGEVQALRGVQEITEARLRELRQQNE 165          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  107 TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKVDPDK----------WEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAF-LYKVVEDPDLLPRIIM----EKESTTNR 664
            ++N  + FV K + M+ +P    ++ W  + +SFIV+D  +F++ ILP +FK +NF+SFVRQLN Y F KV  ++          WEF ++ F    K LL NI R+  S    A+         +     E +  ++  +   QK LD  L G+     AT  +   +  F L + +E  DLL   I+    + E +T R
Sbjct:    3 SSNGSSDFVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRKAPSKRNLANE--------NTAPVIENLKQQVDSILDFQKLLDRNLSGL-----ATSYQTILLKMFELKRGIESRDLLMSSIISYLCDLEGSTQR 190          
BLAST of CF835628 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 47/182 (25.82%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  119 IAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKDNNFSSFVRQLNTYGFRKV----------DPDKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIV--------MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 610
            +  F+ K +++V+D  T+ LI W K   SF++ +   F++ +LP  +K NN +SF+RQLN YGF K+          D D+ EF++ +F R    LL  I R+  ++       +++  A  + L D +++           + ++QE + L  E+  + ++    ++   +++ FL  +V+
Sbjct:   46 VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRKISNNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWREIASLRQKHAKQQQIVNKLIQFLITIVQ 227          
The following BLAST results are available for this feature:
BLAST of CF835628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF2_HUMAN1.917e-1729.57Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF4_MOUSE1.243e-1636.08Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN1.243e-1636.08Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF2_CHICK1.243e-1629.41Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF4_CANFA4.723e-1636.31Heat shock factor protein 4 OS=Canis familiaris GN... [more]
PRR1_SCHPO3.998e-1530.85Transcription factor prr1 OS=Schizosaccharomyces p... [more]
HSF_DROME3.998e-1525.82Heat shock factor protein OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835628 ID=CF835628; Name=CF835628; organism=Citrus sinensis; type=EST; length=785bp
CGCAGCACAGCACAGTACAGCACGCACCCTTTGTTCCTCCCCACCGTCTC
ACTCTCTCCTTCTCTTTTGAGTCTTTTTTCCTCTGTATGGGATGGAGCCC
AACAACACCAACAACGTGATCGCTCCGTTCGTTATGAAGACTTATCAGAT
GGTCAACGATCCAACGACCGATTCGCTAATCTCCTGGGGTAAAGCCAATA
ACAGCTTCATCGTTGTCGACCCTTTAGATTTCTCCCAAAGGATCCTGCCC
GCCTACTTCAAGGACAACAACTTCTCTAGCTTTGTTCGTCAACTCAACAC
CTACGGTTTTAGAAAAGTTGATCCGGACAAATGGGAATTTGCGAACGAGT
GGTTTCTGCGAGGGCAGAAGCACTTGCTGAAGAACATCGTAAGGAGAAAG
CACAGCAGTAACAGAAGCGCTCATCACATGATGATGAGAGGCGGTGCCGG
CGACCAAGATTTAGATGATGAAGAAATAGTGATGGAGATAGCGAGGTTGA
GGCAAGAGCAGAAGTCTTTAGATGAAGAGCTTCAGGGCATGAACAAGAGA
CTGGAAGCAACAGAGAGGCGCCCTGAACAAATGATGGCGTTTCTTTACAA
AGTCGTTGAAGATCCCGACTTGCTTCCTCGCATCATCATGGAAAAAGAAA
GCACCACCAACAGGAATAATTATTATCTTGGGGACAAAAAGAGACGCTTG
ATGATCTCGTCGTCATCACAGCAGCAGCAGCAGCCTTCTAATTCTTCTTC
TTCGGGCATGGCAGCTTCGAGCTCGATAAAATCTG
back to top