CF835638

Overview
NameCF835638
Unique NameCF835638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1117 contig Csv1_Contig1117:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTT1_HUMAN (Glutathione S-transferase theta-1 OS=Homo sapiens GN=GSTT1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 55/198 (27.78%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  123 MVVKVYGPAYASPKRVILCLVEK-EIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNY-NPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWW 707
            M +++Y    + P R +    +K +I FE   VDLIKG+  S  + ++ P  ++P ++DGDF L ES AI+ Y   KY+        + ++ R  V+++L  +        +  L  +++F    G PV  + +  +  +L  TL + E++  ++K +L G   SLADL  I     L+ P+G    + + +   A W
Sbjct:    1 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVP-DYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAIT---ELMHPVGAGCQVFEGRPKLATW 194          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GST1D_ANOGA (Glutathione S-transferase 1, isoform D OS=Anopheles gambiae GN=GstD1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 51/162 (31.48%), Postives = 77/162 (47.53%), Query Frame = 3
Query:  138 YGPAYASPKRVILCLVEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 623
            Y P  A  + V +      +E      DL+KGE   PE+LKL P   +P + D  F L+ESRAI  Y AEKY  +  +L  K  ++R +V Q L  +         +     +F+ +   P +EK +K++   L   L+  E       Y AG+  ++ADLS
Sbjct:    5 YLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIYLAEKY-GKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGFLNTFLEGQE-------YAAGNDLTIADLS 158          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GST1_SCHPO (Glutathione S-transferase 1 OS=Schizosaccharomyces pombe GN=gst1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 52/179 (29.05%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  120 TMVVKVYGPAYASPKRVILCLVEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQD---GDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYL 647
            T+    +GP   +P +V+  L E ++ +ET  V+  K EQ+SPE+L L P G +P + D    D+ ++ES AI+ Y A+KY ++    L +   E   V Q+L  +A         +  Q  + S + + +    +     ++ + L V E+ L    YL  + F++ADLS I + ++L
Sbjct:    5 TLWSHAHGP---NPWKVVQALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQASGQG----IIWGQAGWFSVYHQELVISAITRYRNEIKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFL 176          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTT2_MOUSE (Glutathione S-transferase theta-2 OS=Mus musculus GN=Gstt2 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 49/197 (24.87%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  123 MVVKVYGPAYASPKRVILCLVEKE-IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADLSHIPFTHYLVGPMG-RQHMIRDRKHVSAW 704
            M +++Y    + P R +    +K  I F+T  VD++KG+  S ++ ++    ++PV++DG F+L ES AI+ Y + KY+          ++ R  V ++L   A N       L    +     G  V ++ V+ + +++   L   E++  + + +L G   +LADL  +     L+ P+G   ++   R  ++AW
Sbjct:    1 MGLELYLDLLSQPSRAVYIFAKKNGIPFQTRTVDILKGQHMSEQFSQVNCLNKVPVLKDGSFVLTESTAILIYLSSKYQ-VADHWYPADLQARAQVHEYLGWHADNIRGTFGVLLWTKVLGPLIGVQVPQEKVERNRDRMVLVLQQLEDKFLRDRAFLVGQQVTLADLMSL---EELMQPVGLGYNLFEGRPQLTAW 193          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTT2_HUMAN (Glutathione S-transferase theta-2 OS=Homo sapiens GN=GSTT2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 56/198 (28.28%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  123 MVVKVYGPAYASPKRVILCLVEKE-IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAI-YELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEER-LSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQH-MIRDRKHVSAW 704
            M ++++    + P R +    +K  I  E   VDL+KG+ +S E+L++   G+LP ++DGDFIL ES AI+ Y + KY++         ++ R  V ++L   A          L +Q+L     G  V E+ V+ +   + + L   E++ L    +LAG   +LADL  +     L+ P+   + +   R  ++AW
Sbjct:    1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTP-DHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVL-GPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMAL---EELMQPVALGYELFEGRPRLAAW 193          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTT1_BOVIN (Glutathione S-transferase theta-1 OS=Bos taurus GN=GSTT1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/201 (28.86%), Postives = 99/201 (49.25%), Query Frame = 3
Query:  123 MVVKVYGPAYASPKRVILCLVEKE-IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVE----AHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADLSHIPFTHYLVGPMGRQ-HMIRDRKHVSAW 704
            M +++Y    + P R I    +K  I FE   VDL KG+  S  + ++ P  ++P+++DGDFIL ES AI+ Y A KY+        + ++    V+++L  +      N   A++   +  +F    G PV  +++  +  +L   L V E +  + K +L G   SLADL  I     L+ P+G    + + R  ++AW
Sbjct:    1 MGLELYLDLLSQPCRAIYIFAKKNRIPFELRTVDLRKGQHLSDAFAQVNPLQKVPILKDGDFILTESVAILLYLARKYKVP-DHWYPQDLQACARVDEYLAWQHTALRRNCLRALWHKVMLPVF---LGEPVSPEMLATTLAELDMALQVLEGKFLQDKAFLTGSHISLADLVAIT---ELMHPVGAGCQVFKGRPKLAAW 194          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTZ2_DIACA (Glutathione S-transferase 2 (Fragment) OS=Dianthus caryophyllus GN=GST2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  165 RVILCLVEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKL 515
            RV + L  K ++FE   VDL+KGE  +PE+LKL P G +P +  GD ++ +S AI+ Y  EK+      LL + +++R L  Q   + A N  P    L +      K G   DEKL
Sbjct:   22 RVRIALHLKGLDFEYKAVDLLKGEHLTPEFLKLNPLGYVPALVHGDIVIADSLAIIMYLEEKFPE--NPLLPRDLQKRALNYQAANIVASNIQP-FQNLAVLNYIEEKLGS--DEKL 133          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GSTA_RHILE (Protein gstA OS=Rhizobium leguminosarum GN=gstA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  195 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHN--YNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 623
            + +E V VDL  G  ++P++LKL PFG++PV+ D   ++ +S AI+ Y A KY    T+ L +       +++WL V A    Y P    L    +F + F    DE + +       + L + E  L   ++L GD  ++AD++
Sbjct:   24 VPYELVEVDLAAGAHKAPDFLKLNPFGQVPVLDDNGTVIADSSAILVYLARKYGR--TDWLPEEAVAAARIQKWLSVAAGEIAYGPCAARLV--TVFGADF--RTDEVIARAH-----RILALVEAELGARRFLLGDNATIADIA 157          
BLAST of CF835638 vs. ExPASy Swiss-Prot
Match: GST2_SCHPO (Glutathione S-transferase 2 OS=Schizosaccharomyces pombe GN=gst2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  156 SPKRVILCLVEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQD---GDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMG 662
            +P +V+L L E  + +E +  D  KGEQ+  E+L L P G +P + D    D+ ++ES AI+ Y A+KY +     L     E   + Q+L  +A        +      F+     PV   + +  +E + + L V E+ L    YL  + +++ADLS IP+ + L G  G
Sbjct:   14 NPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLIQYLFFQASGQGVIWGQAG---WFNFFHHEPVVSAVTRYRNE-IKRVLGVLEDILKDRDYLVANKYTIADLSFIPWNYNLGGLFG 181          
The following BLAST results are available for this feature:
BLAST of CF835638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GSTT1_HUMAN1.737e-1127.78Glutathione S-transferase theta-1 OS=Homo sapiens ... [more]
GST1D_ANOGA1.737e-1131.48Glutathione S-transferase 1, isoform D OS=Anophele... [more]
GST1_SCHPO2.269e-1129.05Glutathione S-transferase 1 OS=Schizosaccharomyces... [more]
GSTT2_MOUSE5.054e-1124.87Glutathione S-transferase theta-2 OS=Mus musculus ... [more]
GSTT2_HUMAN5.054e-1128.28Glutathione S-transferase theta-2 OS=Homo sapiens ... [more]
GSTT1_BOVIN5.054e-1128.86Glutathione S-transferase theta-1 OS=Bos taurus GN... [more]
GSTZ2_DIACA8.621e-1136.75Glutathione S-transferase 2 (Fragment) OS=Dianthus... [more]
GSTA_RHILE8.621e-1130.34Protein gstA OS=Rhizobium leguminosarum GN=gstA PE... [more]
GST2_SCHPO8.621e-1129.65Glutathione S-transferase 2 OS=Schizosaccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01J24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835638 ID=CF835638; Name=CF835638; organism=Citrus sinensis; type=EST; length=713bp
ACGATCCCACTATGGCGCCACTATATTAGCCTATATAAAAGGGATTAGCA
AACTGCCCGTAGATTACGATCACAAGCTCAATAGCTGCTTTTTATCGACA
GAAAAAGTTAACACCAGCAACGATGGTGGTCAAGGTGTACGGTCCGGCTT
ATGCTTCTCCCAAACGAGTGATTTTGTGCTTGGTTGAGAAGGAAATCGAA
TTTGAAACTGTCCCCGTTGATCTCATCAAAGGAGAGCAGAGAAGTCCTGA
GTACCTCAAATTACAGCCTTTTGGAGAGCTTCCTGTCATTCAAGATGGAG
ATTTTATTTTATACGAGTCGCGAGCTATCATGAGGTACTATGCCGAAAAG
TACAGGTCTCAAGGAACCGAACTTCTGGGTAAAACAATTGAAGAAAGAGG
CCTGGTGGAACAGTGGCTAGAAGTAGAGGCACACAACTACAACCCAGCAA
TTTACGAGCTGACCATCCAACTTTTATTTTCTTCCAAGTTTGGACGTCCC
GTTGATGAAAAATTGGTGAAGGAGAGTGACGAAAAGCTTGGAAAAACGCT
CGACGTTTACGAGGAGAGGCTCTCAAAGAGCAAGTATTTGGCTGGTGATT
TCTTCAGCCTGGCTGATCTGAGTCACATTCCATTTACCCACTACTTGGTT
GGGCCGATGGGGAGACAGCATATGATTAGAGACAGGAAGCATGTGAGTGC
TTGGTGGGATGAT
back to top