CF835646

Overview
NameCF835646
Unique NameCF835646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3
Query:  477 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3
Query:  477 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3
Query:  477 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 78          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3
Query:  477 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3
Query:  477 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 3
Query:  456 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNG+LAMFSMFGF
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGF 86          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 85/228 (37.28%), Postives = 113/228 (49.56%), Query Frame = 3
Query:   33 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNG+LAM +  GF
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 70/167 (41.92%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  216 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGKLAMFSMFGF 710
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNG+LA+ ++ GF
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 71/183 (38.80%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  183 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGKLAMFSMFG 707
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNG+LAM ++ G
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 74/196 (37.76%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  144 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGKLAMFSMFG 707
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNG+LAM ++ G
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
The following BLAST results are available for this feature:
BLAST of CF835646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC2.417e-3794.87Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.417e-3794.87Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.417e-3794.87Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.417e-3794.87Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.417e-3794.87Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA3.859e-3584.88Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.018e-2737.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC8.066e-2541.92Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC2.347e-2438.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.828e-2437.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835646 ID=CF835646; Name=CF835646; organism=Citrus sinensis; type=EST; length=711bp
CTAGAGCTCACCCTTTAATACGATATTGTAAAATGGCAACCTCGACCATG
GCCCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGG
CAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCA
AGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTAC
TTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCC
TGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCT
TTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTG
GGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAA
GTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGG
GCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCT
GAGCTCAAGGTTAAGGAAATCAAGAATGGAAAGTTGGCTATGTTCTCCAT
GTTTGGTTTCT
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