CF835647

Overview
NameCF835647
Unique NameCF835647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835647_ssr115 microsatellite CF835647_ssr115:115..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1268 contig Csv1_Contig1268:152..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = -1
Query:  187 EQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 507
            + I WDL  A  FCATWDA KPL+W  KYGWTAFC   GP GQ +CG+CL V N+GTGA+  VRIVDQC+NGGLDLD  VF ++D NG G  QG L V+Y+FV+C D
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.585e-29
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = -1
Query:  187 KPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 447
            KP +W  KYGWTAFC   GP G+ +CG+CLRV N+GTGA  IVRIVDQC+NGGLDLD GVF ++D +G GYQQG L V+Y+FV+C +
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = -1
Query:  355 NVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLR 540
            N +A YH++ P Q  WDL A  A+C+TWDA KP +W  +YGWTAFC   GP       RCLR
Sbjct:   31 NCQATYHYYNPAQNNWDLRAVSAYCSTWDADKPYSW--RYGWTAFCGPAGP-------RCLR 83          
The following BLAST results are available for this feature:
BLAST of CF835647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4_PRUPE3.872e-3662.62Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
WIN_SOYBN4.585e-2964.37Wound-induced protein (Fragment) OS=Glycine max GN... [more]
CHAL_BRARA2.286e-1251.61Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835647 ID=CF835647; Name=CF835647; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTAAAGGGACCTTTAAAGGAACCTTTTATTACATAACTGGAGGGCC
CCCCCTTACTTCTTGATACTTCATCAAAAGTTTATTTTATTTATGAACTA
AATATATAGAGGGATAATTAATTAATAAATTAACCCTATTACAGCAATAA
GCTTCCATCGATCATGGAATTATAAATGGGGCTTTAATCATTGCAGTTCA
CAAACTCGTAGCTGACAGAAAGGAAGCCTTGTTGATAGCCTATTCCATTG
GGGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAACCCCCCATTGGC
ACACTGATCAACAATTCTCACAATTTGTTGGGCTCCTGTACCACTGTTTG
GGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTCCGCCCAAA
TGACAAAAAGCGGTCCACCCATATTTCTGGCCCCAGGCCAAGGGCTTGCT
GGCATCCCATGTTGCGCAAAAAGCCCTCGCTGCCGTCAAGTCCCATCCAA
TTTGCTCAGGGGGGAAAAAATGATACCTGGCTCTCACATTAAAAGCACTT
TGGGCAAAACCAGGGGC
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