CF835658

Overview
NameCF835658
Unique NameCF835658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = -1
Query:  174 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP*ISTASKEIY 617
            YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YS A  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +  E LP  + A+ + Y
Sbjct:  266 YVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESIERLPVYNKAAWKHY 409          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 83/190 (43.68%), Postives = 110/190 (57.89%), Query Frame = -1
Query:   51 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGIIKQSQ-GNLYKI*IAV 617
            YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YS A  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I   +  NL K  +AV
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVE-HQENRPFLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCIPSKEPKNLSKEKLAV 412          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK3_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = -1
Query:  228 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 617
            YVPSHL  M+FEL KNS+RA  E Y D  +  P ++ +V  G ED++IK+SD GGG+P   + ++F Y+YS A  P  E T  A     +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L  L
Sbjct:  236 YVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA----PLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKAL 361          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 72/151 (47.68%), Postives = 101/151 (66.89%), Query Frame = -1
Query:  168 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP*ISTASKEIYGS 617
            YVPSHL+ MVFEL KN++RA  E + +   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YS A  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  D  E LP  + A+ + Y +
Sbjct:  268 YVPSHLYHMVFELFKNAMRATMEHHANRG-VYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYNT 413          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 82/190 (43.16%), Postives = 110/190 (57.89%), Query Frame = -1
Query:   51 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII-KQSQGNLYKI*IAV 617
            YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YS A  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I  +   NL K  +AV
Sbjct:  243 YVPSHLHHMLFELFKNAMRATVE-HQENRPSLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCIPSREPKNLAKEKLAV 412          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = -1
Query:  228 YVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 617
            YVPSHL  M+FEL KNS+RA  E + D  +  P ++ +V  G ED++IK+SD GGG+P   + ++F Y+YS A  P  E T  A     +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L  L
Sbjct:  236 YVPSHLFHMLFELFKNSMRATVELHEDKKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA----PLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKAL 361          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = -1
Query:  183 VPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSPARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DFQEPLP*ISTASK 614
            VPSHL+ M+FEL KN++RA  E Y   D   P I++ V  G ED++IK+ D GGG+ R+ L +++ Y+YS A  P  + T        +AGYGYGLP+SRLYARYF GDL ++SMEG+GTDA ++L  +  +  E LP  ST+S+
Sbjct:  237 VPSHLYHMMFELFKNAMRATVE-YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTILERLYNYMYSTAPPPPRDGTQ-----APLAGYGYGLPLSRLYARYFLGDLFLVSMEGHGTDACIYLKAVPVEASEVLPIYSTSSR 375          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = -1
Query:  213 FPYVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS--------PARNPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQE 623
            FP++P  L +++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++        P  NPL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  262 FPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRINPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 55/147 (37.41%), Postives = 86/147 (58.50%), Query Frame = -1
Query:  213 FPYVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS--------PARNPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQE 623
            FP++P  L +++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++        P  +PL  + D+   A  G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  262 FPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = -1
Query:  213 FPYVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS--------PARNPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQE 623
            FP++P  L +++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++        P  +PL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  262 FPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
The following BLAST results are available for this feature:
BLAST of CF835658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK1_RAT2.677e-3148.32[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RAT3.497e-3143.68[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_HUMAN3.497e-3153.08[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN3.497e-3147.68[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE7.790e-3143.16[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_MOUSE1.017e-3052.31[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDHK2_CAEEL8.613e-3048.28Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]
BCKD_MOUSE1.739e-2237.41[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN1.739e-2237.41[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_RAT5.061e-2236.73[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01K12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835658 ID=CF835658; Name=CF835658; organism=Citrus sinensis; type=EST; length=629bp
TTTTTTTTTTTTTTTTTAAAGAAAGCTGCCAATTTATTCCGTTAAAAATT
GACAGCAATTCATATCTTGTACAAATTGCCTTGACTTTGTTTAATAATTC
CATCAATTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGATGTTGCA
TTGAAGTTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAAT
TCAGGGTAAGGGTTCTTGAAAATCCCCCAAGCGCGACAAATGGAGATATG
CATCAGTTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAA
TACCGAGCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCAT
TGTTCCCATGTCAGCTGCTAAATCAGTGTTTTCATCCAAAGGGTTTCTGG
CAGGGCTGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATG
CCACCTCCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGC
AACTATTATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCT
CTTCAACAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAAATGC
AAGTGTGAAGGGACGTAAGGGAATGTAAA
back to top