CF835658

Overview
NameCF835658
Unique NameCF835658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835658 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = -1 
Query:  213 FPYVPSHLHFMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS--------PARNPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDFQE 623
            FP++P  L +++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++        P  +PL  + DL      G M G+G+GLP SR YA Y GG L++ S++G GTD YL L  +   +E
Sbjct:  262 FPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLVIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDLHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLRLQSLQGIGTDVYLRLRHIDGREE 408
The following BLAST results are available for this feature:
BLAST of CF835658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BCKD_BOVIN8.633e-2236.73[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835658 ID=CF835658; Name=CF835658; organism=Citrus sinensis; type=EST; length=629bp
TTTTTTTTTTTTTTTTTAAAGAAAGCTGCCAATTTATTCCGTTAAAAATT
GACAGCAATTCATATCTTGTACAAATTGCCTTGACTTTGTTTAATAATTC
CATCAATTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGATGTTGCA
TTGAAGTTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAAT
TCAGGGTAAGGGTTCTTGAAAATCCCCCAAGCGCGACAAATGGAGATATG
CATCAGTTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAA
TACCGAGCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCAT
TGTTCCCATGTCAGCTGCTAAATCAGTGTTTTCATCCAAAGGGTTTCTGG
CAGGGCTGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATG
CCACCTCCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGC
AACTATTATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCT
CTTCAACAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAAATGC
AAGTGTGAAGGGACGTAAGGGAATGTAAA
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