CF835666

Overview
NameCF835666
Unique NameCF835666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13849 contig Csv1_Contig13849:8..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  401 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQP------GAPLTVNQQIIC 721
            +A D  +G  GG A +I GHPFDT+KV+LQ Q      + P+Y G +   +  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL +  P      GA     Q +IC
Sbjct:    1 MALDFLAGCAGGVAGVIVGHPFDTVKVRLQVQNT----EKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCVIC 110          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCATL_BOVIN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.787e-13
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  401 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQP------GAPLTVNQQIIC 721
            +A D  +G  GG A ++ GHPFDT+KV+LQ Q      + P+Y G +   +  I  E   GLY+G+G+PL  +   NAL+F V+G  + AL R  P      GA     Q +IC
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSV----EKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGVQGNTLRALGRDSPLNQFLAGAAAGAIQCVIC 110          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCATL_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  401 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQP------GAPLTVNQQIIC 721
            +A D  +G  GG A +I GHPFD +KV+LQ Q      + P+Y G +   +  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL +  P      GA     Q +IC
Sbjct:    1 MALDFLAGCAGGVAGVIVGHPFDIVKVRLQVQST----EKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCVIC 110          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: YMC1_YEAST (Carrier protein YMC1, mitochondrial OS=Saccharomyces cerevisiae GN=YMC1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  401 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQME 664
            + KDL +GT GG AQ++ G PFDT KV+LQ+   P          AM+ V++ +A EGPRG YKG   PL  V A  +L F V   M+
Sbjct:   25 VVKDLLAGTAGGIAQVLVGQPFDTTKVRLQTSSTP--------TTAMEVVRKLLANEGPRGFYKGTLTPLIGVGACVSLQFGVNEAMK 104          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: MCFD_DICDI (Mitochondrial substrate carrier family protein D OS=Dictyostelium discoideum GN=mcfD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  383 SALMGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF 643
            + ++  + KD  +G+VGG + ++ GHPFDTIKV LQ       G  PK+     A+K  +  +G +G+Y+G+  PL +V+  N++ F
Sbjct:   13 AGILNSVGKDFVAGSVGGMSSIMAGHPFDTIKVMLQD----ASGNLPKFKNGFQALKYIMKVDGIKGIYRGLSVPLFSVSFTNSVFF 95          
BLAST of CF835666 vs. ExPASy Swiss-Prot
Match: ARG13_NEUCR (Amino-acid transporter arg-13 OS=Neurospora crassa GN=arg-13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  407 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAP 694
            +D+  G+  G       +PFDT+KV+LQSQP  LP    +Y G +D  +Q+I A+G  GLY+G+ APL   A  N+ LF       +LL S   AP
Sbjct:   44 EDIVYGSAAGIVGKYIEYPFDTVKVRLQSQPDHLP---LRYTGPLDCFRQSIRADGFLGLYRGISAPLVGAALENSSLFFFERIGRSLLYSSGFAP 136          
The following BLAST results are available for this feature:
BLAST of CF835666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MCATL_RAT3.665e-1339.47Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCATL_BOVIN4.787e-1338.60Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCATL_MOUSE1.393e-1238.60Mitochondrial carnitine/acylcarnitine carrier prot... [more]
YMC1_YEAST4.052e-1244.32Carrier protein YMC1, mitochondrial OS=Saccharomyc... [more]
MCFD_DICDI2.011e-1135.63Mitochondrial substrate carrier family protein D O... [more]
ARG13_NEUCR9.981e-1140.63Amino-acid transporter arg-13 OS=Neurospora crassa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835666 ID=CF835666; Name=CF835666; organism=Citrus sinensis; type=EST; length=777bp
GAGTGGTTGGTCCTTGTCCAGTTAACCACTCTCATGTGGCTGTGCCTGTA
AATCTGCTTCAAGACTCATTTCTTTATTTTTCTTTCCTTTTATTTTAAGA
TTGTCACAGCCTCCAATATCCCATTACCCACCTCCTTCCTTTTTAGTACC
TTTTTTTTCTATTGTCATTCCTTTTTTTCTCTCATTAAAAAAGTAAACCC
GAAGAAAAAATAAGAAAAATAAAACCCAGTTCCTTTTTCCTGGCGTTTTT
TTAATTTGTATACCCTCCTTTTAATCTAATACTTTGTGTTTTCTCAAATT
GAATCATTTGAGGGAAACAACTTTTCTCCACTAGATTCGGTTGCCGTTCT
CGGGGCTCTGCTTACTCCGGTGTCAGTGAGAATCGGCTCTGATGGGAGAC
ATAGCCAAGGATCTATTTTCTGGGACTGTTGGAGGGGCAGCACAATTAAT
ATGTGGGCACCCATTTGATACCATCAAGGTCAAGCTTCAAAGCCAGCCTG
CTCCACTCCCTGGCCAACCTCCCAAGTATGCTGGTGCCATGGATGCTGTC
AAGCAAACCATAGCTGCCGAAGGGCCAAGGGGCTTGTACAAAGGTATGGG
AGCTCCACTAGCTACTGTTGCCGCTTTTAATGCCCTCCTATTTACAGTGA
GAGGACAAATGGAGGCACTGCTCAGATCTCAACCTGGTGCCCCACTAACC
GTCAACCAGCAGATTATTTGCGGGGCTGGGGCTGGTGTTGCTGTTTCTTT
TTCTGCTGCCCCACAGAATTGATCAAA
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